Bioconductor MethylKit

Showing : methylKit • reset

vote

replies

199

views

methylKit

updated 19 days ago by James W. MacDonald 65k • written 24 days ago by CHEN • 0

votes

115

views

methylKit

20 days ago • updated 19 days ago Modoc Kesner ▴ 10

votes

replies

429

views

methylKit

8 months ago Andrés • 0

votes

581

views

methRead methylkit

16 months ago liulip • 0

votes

replies

642

views

methyl methylKit

2.1 years ago hasche • 0

votes

replies

1.5k

views

GenomicRanges methylKit S4Vectors

updated 2.1 years ago by James W. MacDonald 65k • written 2.1 years ago by hasche • 0

votes

1.1k

views

methylkit

updated 2.5 years ago by alex.gos90 ▴ 10 • written 2.9 years ago by hasche • 0

votes

1.1k

views

methylation methylKit bsseq

updated 2.5 years ago by alex.gos90 ▴ 10 • written 2.8 years ago by ag1805x ▴ 80

votes

1.1k

views

annotateWithGeneParts methylKit

2.6 years ago tanmayroy1979 ▴ 20

votes

replies

1.2k

views

methylkit normalizecoverage NA

updated 5.5 years ago by altuna akalin ▴ 20 • written 5.5 years ago by GFM ▴ 20

votes

replies

1.1k

views

R bioconductor methylation methylkit

updated 5.8 years ago by altuna akalin ▴ 20 • written 5.8 years ago by nilaycan • 0

votes

replies

1.5k

views

methylkit Tutorial

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by s1432985 • 0

votes

replies

1.7k

views

methylKit

updated 6.8 years ago by altuna akalin ▴ 20 • written 6.8 years ago by ch8316f5eyu • 0

votes

replies

1.7k

views

methylKit

6.9 years ago kamal.fartiyal84 ▴ 10

votes

replies

1.6k

views

methylKit bioconductor

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by tangming2005 ▴ 190

15 results • Page 1 of 1

Recent ...

Replies

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Supporter to JKim • 0