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methylKit
•
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0
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replies
399
views
MethylKit::calculateDiffMeth with two experimental factors
methylKit
7 months ago
Andrés
• 0
0
votes
1
reply
551
views
[Methylkit]-Error in validObject(.Object) :
methRead
methylkit
15 months ago
liulip
• 0
0
votes
0
replies
622
views
Generating 5mCG or 5hmCG values per gene from BS/OXBS data
methyl
methylKit
24 months ago
hasche
• 0
0
votes
6
replies
1.4k
views
Error: duplicate row.names
GenomicRanges
methylKit
S4Vectors
updated 2.0 years ago by
James W. MacDonald
65k • written 2.0 years ago by
hasche
• 0
0
votes
1
reply
1.1k
views
Methread error Error in data[, 5] * data[, 6] : non-numeric argument to binary operator
methylkit
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.8 years ago by
hasche
• 0
0
votes
1
reply
1.0k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.7 years ago by
ag1805x
▴ 80
2
votes
1
reply
1.1k
views
Not able to Annotate CpG Island using methylKit
annotateWithGeneParts
methylKit
2.5 years ago
tanmayroy1979
▴ 20
0
votes
2
replies
1.1k
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 5.4 years ago by
altuna akalin
▴ 20 • written 5.4 years ago by
GFM
▴ 20
0
votes
2
replies
1.1k
views
MethylKit DSS Package
R
bioconductor
methylation
methylkit
updated 5.7 years ago by
altuna akalin
▴ 20 • written 5.7 years ago by
nilaycan
• 0
0
votes
3
replies
1.5k
views
How to install MethylKit?
methylkit
Tutorial
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
s1432985
• 0
0
votes
2
replies
1.7k
views
report error of methylkit
methylKit
updated 6.7 years ago by
altuna akalin
▴ 20 • written 6.7 years ago by
ch8316f5eyu
• 0
0
votes
2
replies
1.7k
views
error reading bismark sam/bam files
methylKit
6.8 years ago
kamal.fartiyal84
▴ 10
0
votes
4
replies
1.5k
views
load methylKit segfault error
methylKit
bioconductor
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
tangming2005
▴ 190
13 results • Page
1 of 1
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Replies
Comment: Minfi - estimatecellscount
by
clacarion
• 0
Thank you for your response, that's what i was thinking I will try with the rgset only and come back to tell you what's happening ! Best…
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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