Bioconductor MethylKit

Showing : methylKit • reset

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GenomicRanges methylKit S4Vectors

updated 2.1 years ago by James W. MacDonald 65k • written 2.1 years ago by hasche • 0

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methylKit bioconductor

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by tangming2005 ▴ 190

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methylkit Tutorial

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by s1432985 • 0

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R bioconductor methylation methylkit

updated 5.8 years ago by altuna akalin ▴ 20 • written 5.8 years ago by nilaycan • 0

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methylkit normalizecoverage NA

updated 5.5 years ago by altuna akalin ▴ 20 • written 5.5 years ago by GFM ▴ 20

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methylKit

updated 6.8 years ago by altuna akalin ▴ 20 • written 6.8 years ago by ch8316f5eyu • 0

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methylKit

6.8 years ago kamal.fartiyal84 ▴ 10

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190

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methylKit

updated 13 days ago by James W. MacDonald 65k • written 18 days ago by CHEN • 0

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methylkit

updated 2.5 years ago by alex.gos90 ▴ 10 • written 2.9 years ago by hasche • 0

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108

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methylKit

14 days ago • updated 13 days ago Modoc Kesner ▴ 10

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annotateWithGeneParts methylKit

2.6 years ago tanmayroy1979 ▴ 20

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methylation methylKit bsseq

updated 2.5 years ago by alex.gos90 ▴ 10 • written 2.8 years ago by ag1805x ▴ 80

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methRead methylkit

16 months ago liulip • 0

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640

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methyl methylKit

2.0 years ago hasche • 0

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422

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methylKit

8 months ago Andrés • 0

15 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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