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methylKit
•
reset
0
votes
1
reply
115
views
Granges regionCounts not returning the expected number of entries
methylKit
19 days ago • updated 18 days ago
Modoc Kesner
▴ 10
1
vote
2
replies
197
views
MethylKit read issue
methylKit
updated 18 days ago by
James W. MacDonald
65k • written 23 days ago by
CHEN
• 0
0
votes
0
replies
428
views
MethylKit::calculateDiffMeth with two experimental factors
methylKit
8 months ago
Andrés
• 0
0
votes
1
reply
580
views
[Methylkit]-Error in validObject(.Object) :
methRead
methylkit
16 months ago
liulip
• 0
0
votes
0
replies
642
views
Generating 5mCG or 5hmCG values per gene from BS/OXBS data
methyl
methylKit
2.1 years ago
hasche
• 0
0
votes
6
replies
1.5k
views
Error: duplicate row.names
GenomicRanges
methylKit
S4Vectors
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
hasche
• 0
0
votes
1
reply
1.1k
views
Methread error Error in data[, 5] * data[, 6] : non-numeric argument to binary operator
methylkit
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.9 years ago by
hasche
• 0
0
votes
1
reply
1.1k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.8 years ago by
ag1805x
▴ 80
2
votes
1
reply
1.1k
views
Not able to Annotate CpG Island using methylKit
annotateWithGeneParts
methylKit
2.6 years ago
tanmayroy1979
▴ 20
0
votes
2
replies
1.2k
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 5.5 years ago by
altuna akalin
▴ 20 • written 5.5 years ago by
GFM
▴ 20
0
votes
2
replies
1.1k
views
MethylKit DSS Package
R
bioconductor
methylation
methylkit
updated 5.8 years ago by
altuna akalin
▴ 20 • written 5.8 years ago by
nilaycan
• 0
0
votes
3
replies
1.5k
views
How to install MethylKit?
methylkit
Tutorial
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
s1432985
• 0
0
votes
2
replies
1.7k
views
report error of methylkit
methylKit
updated 6.8 years ago by
altuna akalin
▴ 20 • written 6.8 years ago by
ch8316f5eyu
• 0
0
votes
2
replies
1.7k
views
error reading bismark sam/bam files
methylKit
6.9 years ago
kamal.fartiyal84
▴ 10
0
votes
4
replies
1.6k
views
load methylKit segfault error
methylKit
bioconductor
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
tangming2005
▴ 190
15 results • Page
1 of 1
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Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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