Bioconductor Methylation

Showing : methylation • reset

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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3.3k

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methylation minfi

written 7.9 years ago by Asma rabe ▴ 290

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2.0k

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ChAMP methylation BMIQ

updated 5 months ago by peter.brederlo • 0 • written 5.0 years ago by moldach ▴ 20

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1.8k

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ChAMP champ methylation

updated 8 months ago by mike • 0 • written 4.0 years ago by jkong • 0

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190

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EPICV1 Methylation combineArrays minifi EPICv2manifest

updated 15 days ago by Tim Peters ▴ 170 • written 15 days ago by Kim • 0

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1.4k

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minfi software error methylation illumina450k

updated 11 months ago by kuzn.di • 0 • written 8.3 years ago by pm2015 • 0

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510

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edgeR methylation

updated 11 weeks ago by Gordon Smyth 50k • written 12 weeks ago by sat • 0

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126

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bsseq methylation

updated 17 days ago by James W. MacDonald 65k • written 18 days ago by ja569116 • 0

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230

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Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm

4 months ago kyj2226 • 0

9 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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