Bioconductor Methylation

Showing : methylation • reset

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188

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EPICV1 Methylation combineArrays minifi EPICv2manifest

updated 15 days ago by Tim Peters ▴ 170 • written 15 days ago by Kim • 0

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126

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bsseq methylation

updated 16 days ago by James W. MacDonald 65k • written 18 days ago by ja569116 • 0

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510

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edgeR methylation

updated 11 weeks ago by Gordon Smyth 50k • written 12 weeks ago by sat • 0

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230

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Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm

4 months ago kyj2226 • 0

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1.3k

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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2.0k

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ChAMP methylation BMIQ

updated 5 months ago by peter.brederlo • 0 • written 5.0 years ago by moldach ▴ 20

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1.8k

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ChAMP champ methylation

updated 8 months ago by mike • 0 • written 4.0 years ago by jkong • 0

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1.4k

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minfi software error methylation illumina450k

updated 11 months ago by kuzn.di • 0 • written 8.3 years ago by pm2015 • 0

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3.3k

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methylation minfi

written 7.9 years ago by Asma rabe ▴ 290

9 results • Page 1 of 1

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Comment: How to make DGEList and design matrix by edgeR package by prity6459 • 0

Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…

Comment: Finding DEGs by using edgeR by prity6459 • 0

Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …

Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k

It doesn't seem to me that there is necessarily any problem with the analysis. You that there are "too many low-reads" but actually there …

Answer: How to make DGEList and design matrix by edgeR package by Gordon Smyth 50k

Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…

Answer: Finding DEGs by using edgeR by Gordon Smyth 50k

I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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