Bioconductor Methylation

Showing : methylation • reset

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2.0k

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ChAMP methylation BMIQ

updated 5 months ago by peter.brederlo • 0 • written 5.0 years ago by moldach ▴ 20

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1.8k

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ChAMP champ methylation

updated 8 months ago by mike • 0 • written 4.0 years ago by jkong • 0

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1.4k

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minfi software error methylation illumina450k

updated 11 months ago by kuzn.di • 0 • written 8.3 years ago by pm2015 • 0

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1.4k

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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523

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edgeR methylation

updated 12 weeks ago by Gordon Smyth 50k • written 3 months ago by sat • 0

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239

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Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm

4 months ago kyj2226 • 0

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211

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EPICV1 Methylation combineArrays minifi EPICv2manifest

updated 20 days ago by Tim Peters ▴ 170 • written 21 days ago by Kim • 0

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139

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bsseq methylation

updated 22 days ago by James W. MacDonald 65k • written 24 days ago by ja569116 • 0

8 results • Page 1 of 1

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Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

This comment helps.

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

I am not sure how your comment helps here?

Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0