Biostar Methylation

Showing : methylation • reset

votes

replies

6.2k

views

limma methylation ewas

updated 5.8 years ago by Steve Lianoglou 13k • written 5.8 years ago by CPR ▴ 30

votes

replies

3.1k

views

bsseq bismark methylation

6.5 years ago enricoferrero ▴ 610

votes

replies

804

views

limma epic methylation limma design matrix covariates

updated 3.7 years ago by Aaron Lun ★ 27k • written 3.7 years ago by c.bettencourt • 0

votes

replies

3.0k

views

minfi methylation IlluminaHumanMethylationEPICmanifest IlluminaHumanMethylationEPICanno.ilmn10b.hg19

updated 6.2 years ago by Kasper Daniel Hansen 6.5k • written 6.2 years ago by igor ▴ 40

votes

replies

571

views

microarray methylation illumina27k minfi

updated 3.2 years ago by Kasper Daniel Hansen 6.5k • written 3.2 years ago by laurenz.holcik • 0

votes

replies

1.9k

views

methylation dmr analysis bumphunter

updated 5.4 years ago by James W. MacDonald 59k • written 5.4 years ago by chelsey.ju • 0

votes

replies

481

views

methylation Epic annotation DMRcate

updated 2.6 years ago by James W. MacDonald 59k • written 2.6 years ago by yoursbassanio ▴ 10

votes

900

views

limma decidetests methylation

updated 6.2 years ago by Sean Davis 21k • written 6.2 years ago by kraiczy ▴ 10

votes

replies

3.3k

views

minfi methylation illuminahumanmethylationepicmanifest illumina

6.1 years ago rasii • 0

votes

852

views

methylation 450k

6.3 years ago Pablo marin-garcia ▴ 90

votes

1.2k

views

limma methylation microarray

updated 5.0 years ago by Aaron Lun ★ 27k • written 5.0 years ago by Sarah Nesbitt • 0

votes

replies

7.0k

views

methylation minfi

updated 5.6 years ago by SplittingInfinity ▴ 60 • written 6.7 years ago by parap • 0

votes

replies

1.0k

views

methylation epic champ champ.load() Methylation array

updated 2.4 years ago by Yuan Tian ▴ 250 • written 2.4 years ago by Ankit ▴ 10

votes

318

views

lumi EPIC Methylation

2.1 years ago Zach Roe ▴ 10

votes

replies

1.8k

views

probe annotation illimina 450k methylation minfi methylation

6.9 years ago maden.sean ▴ 10

votes

replies

832

views

edger methylation

updated 3.7 years ago by Gordon Smyth 45k • written 3.9 years ago by sgld • 0

votes

replies

816

views

methylation iscan

7.6 years ago Brian Smith ▴ 120

votes

replies

740

views

cancer methylation rna-seq Job

6.0 years ago Andy Lynch ▴ 100

votes

replies

299

views

minfi R methylation

12 months ago Federica ▴ 10

votes

replies

831

views

dmrseq dmr dmrs bisulfite methylation

updated 4.2 years ago by keegan ▴ 60 • written 4.3 years ago by l.kremer • 0

votes

replies

957

views

EPIC methylation ChAMP

updated 4.1 years ago by yura.grabovska ▴ 30 • written 4.1 years ago by david.ch • 0

votes

672

views

methylation epic champ

updated 3.5 years ago by Yuan Tian ▴ 250 • written 3.5 years ago by D • 0

votes

views

limma methylation MethylationArray

updated 18 days ago by James W. MacDonald 59k • written 18 days ago by fluentin44 • 0

vote

320

views

SVA EPIC methylation limma

updated 2.2 years ago by James W. MacDonald 59k • written 2.2 years ago by whyw6948 • 0

vote

replies

1.8k

views

methylation minfi bumphunter

updated 6.1 years ago by James W. MacDonald 59k • written 6.1 years ago by igor ▴ 40

vote

replies

809

views

software error microarray champ methylation

updated 3.8 years ago by Martin Morgan 25k • written 3.8 years ago by cawten ▴ 10

vote

replies

448

views

methylation limma

updated 2.5 years ago by James W. MacDonald 59k • written 2.5 years ago by yuabrahamliu • 0

vote

replies

978

views

bioconductor methylation

updated 5.4 years ago by Dimitris Polychronopoulos ▴ 70 • written 5.5 years ago by francescacairoli • 0

vote

308

views

ChAMP champ methylation EPIC

updated 2.3 years ago by Yuan Tian ▴ 90 • written 2.3 years ago by cherlyn.t • 0

vote

replies

498

views

ChAMP EPIC Illumina Methylation

2.3 years ago erwin.tomasich ▴ 10

vote

replies

2.0k

views

methylation

updated 6.3 years ago by Peter Hickey ▴ 550 • written 6.3 years ago by Asma rabe ▴ 290

vote

replies

372

views

trackViewer methylation lolliplot

2.5 years ago patriciasolesanchez • 0

vote

335

views

DMR Methylation R Gviz

updated 12 months ago by Robert Ivanek ▴ 730 • written 12 months ago by ltzhou • 0

vote

replies

1.6k

views

minfi methylation idat samplesheet

updated 13 months ago by sci_djw • 0 • written 3.0 years ago by researcher • 0

vote

replies

782

views

methylation microarray illumina minfi methyanalysis

updated 3.4 years ago by Ou, Jianhong ★ 1.3k • written 3.4 years ago by Adam_M • 0

vote

replies

640

views

dmrseq Methylation

updated 2.9 years ago by keegan ▴ 60 • written 2.9 years ago by sorjuelal • 0

vote

replies

1.1k

views

minfi methylation illumina

7.6 years ago Brian Smith ▴ 120

vote

880

views

gene names methylation illumina convertids

updated 4.0 years ago by James W. MacDonald 59k • written 4.0 years ago by arbet003 ▴ 10

vote

replies

1.2k

views

methylation linear model dmr bsseq biseq

6.5 years ago enricoferrero ▴ 610

vote

replies

1.2k

views

minfi methylation dataimport minfidata missmethyl

updated 3.7 years ago by James W. MacDonald 59k • written 3.7 years ago by moldach ▴ 20

vote

replies

525

views

edgeR R methylation GLM

2.7 years ago sabrina.mcnew • 0

vote

791

views

genomicfeatures genomation genomicranges methylation annotation

updated 3.8 years ago by altuna akalin ▴ 20 • written 3.8 years ago by alan.g.hudson • 0

vote

844

views

multtest methylation adjusted pvalue

updated 6.5 years ago by kpollard ▴ 110 • written 6.5 years ago by elhananby ▴ 10

vote

replies

903

views

methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db

updated 7.2 years ago by Pan Du ▴ 80 • written 7.2 years ago by andrew.j.skelton73 ▴ 360

vote

replies

923

views

minfi illumina illumina450k methylation R

4.9 years ago ezrabekele17 • 0

vote

replies

2.2k

views

methylation minfi

updated 6.0 years ago by James W. MacDonald 59k • written 6.0 years ago by Asma rabe ▴ 290

vote

replies

1.8k

views

dmr methylation deseq2 bsseq biseq

updated 6.6 years ago by Kasper Daniel Hansen 6.5k • written 6.6 years ago by enricoferrero ▴ 610

vote

replies

931

views

dmrcate bumphunter methylation epic

updated 5.1 years ago by James W. MacDonald 59k • written 5.1 years ago by yoursbassanio ▴ 10

vote

replies

2.3k

views

limma methylation methyanalysis IMA

updated 7 days ago by Sean Davis 21k • written 5.2 years ago by RC • 0

vote

replies

918

views

DMRcate dmrcate methylation

updated 5.0 years ago by Tim Peters ▴ 120 • written 5.0 years ago by Ellen O • 0

50 results • Page 1 of 1

Recent ...

Replies

Answer: Question on RNA-Seq single sample data analysis in EdgeR by Gordon Smyth 45k

Yes, it is necessary to run `calcNormFactors`, as it always is for any DE analysis. It would also be sensible to filter non-expressed genes…

Comment: How to run GSVA with partially NA genes by blakebowen • 0

I was a little worried about discarding so many genes, although sounds like this can't be helped. The results are still quite useful so I t…

Comment: ashr vs apeglm for interaction data by Ali Barry ▴ 30

Thanks, I'll trying playing a bit there. I have done some minor filtering already (requiring at least 5 counts in 10% of my samples, across…

Comment: ashr vs apeglm for interaction data by Michael Love 37k

I see why apeglm is conservative— the dispersion is very high within group. An idea would be to use ashr but do some additional filtering …

Comment: How to figure out the FC value from Limma by ATpoint ★ 1.2k

That’s an Excel problem, not a GEO/R problem or related to limma and Bioconductor.

Votes

Answer: How to run GSVA with partially NA genes

Answer: How to properly use DESeq2 for an experiment

Comment: ashr vs apeglm for interaction data

Comment: How to figure out the FC value from Limma

Awards • All