Biostar Methylkit

Showing : methylkit • reset

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methyl methylKit

6 weeks ago hasche • 0

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246

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GenomicRanges methylKit S4Vectors

updated 8 weeks ago by James W. MacDonald 59k • written 8 weeks ago by hasche • 0

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273

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methylkit

updated 7 months ago by alex.gos90 ▴ 10 • written 11 months ago by hasche • 0

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251

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methylation methylKit bsseq

updated 7 months ago by alex.gos90 ▴ 10 • written 10 months ago by ag1805x ▴ 50

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247

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annotateWithGeneParts methylKit

7 months ago tanmayroy1979 ▴ 10

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607

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methylkit normalizecoverage NA

updated 3.6 years ago by altuna akalin ▴ 20 • written 3.6 years ago by GFM ▴ 20

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581

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R bioconductor methylation methylkit

updated 3.8 years ago by altuna akalin ▴ 20 • written 3.8 years ago by nilaycan • 0

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818

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methylkit Tutorial

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by s1432985 • 0

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1.1k

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methylKit

updated 4.9 years ago by altuna akalin ▴ 20 • written 4.9 years ago by ch8316f5eyu • 0

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1.1k

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methylKit

4.9 years ago kamal.fartiyal84 ▴ 10

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1.0k

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methylKit bioconductor

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by tangming2005 ▴ 190

11 results • Page 1 of 1

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Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook by Kevin Blighe 3.5k

Hi, I am the main developer of *EnhancedVolcano*. This question seems unrelated to any technical issue pertaining to the package. Irrespect…

Comment: Quantile Normalization after rma or not? by Yang Shi • 0

Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…

Answer: how to understand cpm=1 and how filterByExpr works? by gowthamee • 0

I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…

Comment: different results in DESeq2 when comparing groups in two ways by zohreh.fazelan • 0

Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…

Comment: lmFit, continuous exposure, adjustment covariates by Gordon Smyth 45k

Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…

Votes

A: redundant probe sets in Affymetrix HG-U219

Answer: Quantile Normalization after rma or not?

Answer: Using featureCounts and downloading Rsubread

Answer: different results in DESeq2 when comparing groups in two ways

Awards • All

Scholar to James W. MacDonald 59k