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methylkit
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0
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2
replies
1.7k
views
error reading bismark sam/bam files
methylKit
6.8 years ago
kamal.fartiyal84
▴ 10
0
votes
2
replies
1.7k
views
report error of methylkit
methylKit
updated 6.7 years ago by
altuna akalin
▴ 20 • written 6.7 years ago by
ch8316f5eyu
• 0
0
votes
4
replies
1.5k
views
load methylKit segfault error
methylKit
bioconductor
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
tangming2005
▴ 190
0
votes
3
replies
1.5k
views
How to install MethylKit?
methylkit
Tutorial
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
s1432985
• 0
0
votes
6
replies
1.4k
views
Error: duplicate row.names
GenomicRanges
methylKit
S4Vectors
updated 2.0 years ago by
James W. MacDonald
65k • written 2.0 years ago by
hasche
• 0
0
votes
2
replies
1.1k
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 5.4 years ago by
altuna akalin
▴ 20 • written 5.4 years ago by
GFM
▴ 20
0
votes
1
reply
1.1k
views
Methread error Error in data[, 5] * data[, 6] : non-numeric argument to binary operator
methylkit
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.8 years ago by
hasche
• 0
0
votes
2
replies
1.1k
views
MethylKit DSS Package
R
bioconductor
methylation
methylkit
updated 5.7 years ago by
altuna akalin
▴ 20 • written 5.7 years ago by
nilaycan
• 0
2
votes
1
reply
1.1k
views
Not able to Annotate CpG Island using methylKit
annotateWithGeneParts
methylKit
2.5 years ago
tanmayroy1979
▴ 20
0
votes
1
reply
1.0k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.7 years ago by
ag1805x
▴ 80
0
votes
0
replies
622
views
Generating 5mCG or 5hmCG values per gene from BS/OXBS data
methyl
methylKit
24 months ago
hasche
• 0
0
votes
1
reply
551
views
[Methylkit]-Error in validObject(.Object) :
methRead
methylkit
15 months ago
liulip
• 0
0
votes
0
replies
399
views
MethylKit::calculateDiffMeth with two experimental factors
methylKit
7 months ago
Andrés
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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