Bioconductor Methylkit

Showing : methylkit • reset

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methylKit

updated 20 days ago by James W. MacDonald 65k • written 25 days ago by CHEN • 0

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117

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methylKit

20 days ago Modoc Kesner ▴ 10

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430

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methylKit

8 months ago Andrés • 0

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582

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methRead methylkit

16 months ago liulip • 0

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644

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methyl methylKit

2.1 years ago hasche • 0

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1.5k

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GenomicRanges methylKit S4Vectors

updated 2.1 years ago by James W. MacDonald 65k • written 2.1 years ago by hasche • 0

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1.1k

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methylkit

updated 2.5 years ago by alex.gos90 ▴ 10 • written 2.9 years ago by hasche • 0

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1.1k

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methylation methylKit bsseq

updated 2.5 years ago by alex.gos90 ▴ 10 • written 2.8 years ago by ag1805x ▴ 80

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1.1k

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annotateWithGeneParts methylKit

2.6 years ago tanmayroy1979 ▴ 20

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1.2k

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methylkit normalizecoverage NA

updated 5.5 years ago by altuna akalin ▴ 20 • written 5.5 years ago by GFM ▴ 20

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1.1k

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R bioconductor methylation methylkit

updated 5.8 years ago by altuna akalin ▴ 20 • written 5.8 years ago by nilaycan • 0

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1.6k

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methylkit Tutorial

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by s1432985 • 0

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1.7k

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methylKit

updated 6.8 years ago by altuna akalin ▴ 20 • written 6.8 years ago by ch8316f5eyu • 0

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1.7k

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methylKit

6.9 years ago kamal.fartiyal84 ▴ 10

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1.6k

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methylKit bioconductor

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by tangming2005 ▴ 190

15 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…

Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Votes

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

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Scholar to James W. MacDonald 65k

Supporter to JKim • 0