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methylkit
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reset
2
votes
1
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1.1k
views
Not able to Annotate CpG Island using methylKit
annotateWithGeneParts
methylKit
2.6 years ago
tanmayroy1979
▴ 20
1
vote
2
replies
196
views
MethylKit read issue
methylKit
updated 18 days ago by
James W. MacDonald
65k • written 23 days ago by
CHEN
• 0
0
votes
2
replies
1.7k
views
report error of methylkit
methylKit
updated 6.8 years ago by
altuna akalin
▴ 20 • written 6.8 years ago by
ch8316f5eyu
• 0
0
votes
3
replies
1.5k
views
How to install MethylKit?
methylkit
Tutorial
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
s1432985
• 0
0
votes
2
replies
1.1k
views
MethylKit DSS Package
R
bioconductor
methylation
methylkit
updated 5.8 years ago by
altuna akalin
▴ 20 • written 5.8 years ago by
nilaycan
• 0
0
votes
2
replies
1.2k
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 5.5 years ago by
altuna akalin
▴ 20 • written 5.5 years ago by
GFM
▴ 20
0
votes
1
reply
1.1k
views
Methread error Error in data[, 5] * data[, 6] : non-numeric argument to binary operator
methylkit
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.9 years ago by
hasche
• 0
0
votes
4
replies
1.6k
views
load methylKit segfault error
methylKit
bioconductor
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
tangming2005
▴ 190
0
votes
0
replies
427
views
MethylKit::calculateDiffMeth with two experimental factors
methylKit
8 months ago
Andrés
• 0
0
votes
1
reply
1.1k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.8 years ago by
ag1805x
▴ 80
0
votes
0
replies
642
views
Generating 5mCG or 5hmCG values per gene from BS/OXBS data
methyl
methylKit
2.1 years ago
hasche
• 0
0
votes
1
reply
580
views
[Methylkit]-Error in validObject(.Object) :
methRead
methylkit
16 months ago
liulip
• 0
0
votes
1
reply
115
views
Granges regionCounts not returning the expected number of entries
methylKit
19 days ago • updated 18 days ago
Modoc Kesner
▴ 10
0
votes
6
replies
1.5k
views
Error: duplicate row.names
GenomicRanges
methylKit
S4Vectors
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
hasche
• 0
0
votes
2
replies
1.7k
views
error reading bismark sam/bam files
methylKit
6.9 years ago
kamal.fartiyal84
▴ 10
15 results • Page
1 of 1
Recent ...
Replies
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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