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methylmix
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How can I download Methylation data for MethylMix package. (unusual error popped)
MethylMix
3.1 years ago
Shloka Negi
• 0
0
votes
1
reply
847
views
how to paralelize this R script in a HPC cluster using Slurm Workload Manager?
methylation
epigenomics
slurm
mpi
methylmix
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
parra.sev
▴ 20
0
votes
1
reply
771
views
stuck in "Finding nonparametric adjustments" with MethylMix package.
MethylMix
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
sdjnchen
• 0
0
votes
0
replies
662
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Methylmix results are a bit different from beta values results
cancer
methylmix
methylation
betavalues
DMvalues
4.3 years ago
luciomora8
• 0
1
vote
2
replies
907
views
How to handle big data sets (>10GB) in Bioconductor packages?
big data
methylmix
memory problem
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
perdedorium
• 0
0
votes
0
replies
774
views
MethylMix takes so much time for preprocess step
MethylMix
5.8 years ago
serbulentu
• 0
6 results • Page
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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