Bioconductor MiRNASeq

Showing : miRNASeq • reset

0

votes

0

replies

1.0k

views

miRNAseq TCGAbiolinks TCGAAnalyze_DEA

3.5 years ago Gandino • 0

0

votes

2

replies

1.0k

views

deseq2 miRNASeq designmatrix Batch

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by anshulmbi • 0

0

votes

0

replies

1.1k

views

limma edger voom rnaseq mirnaseq

5.3 years ago atakanekiz ▴ 30

1

vote

1

reply

1.3k

views

deseq2 normalization miRNASeq

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by anshulmbi • 0

4 results • Page 1 of 1

Recent ...

Replies

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by nytwordlehints • 0

I have always had a great fondness for games, so witnessing their transformation into animated versions is truly a delightful experience. […

Comment: FlowSOM is unable to create Output by EvangelinePope • 0

I will remember it, Thank you so much for sharing.

Answer: Limma suqeezeVar by Gordon Smyth 52k

I am not quite clear why you're not using the limma package directly, because it will compute all the variances and the df automatically fo…

Votes

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

Awards • All