Bioconductor MiRNAseq

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miRNAseq TCGAbiolinks TCGAAnalyze_DEA

4.3 years ago Gandino • 0

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deseq2 miRNASeq designmatrix Batch

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by anshulmbi • 0

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limma edger voom rnaseq mirnaseq

6.1 years ago atakanekiz ▴ 30

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deseq2 normalization miRNASeq

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by anshulmbi • 0

4 results • Page 1 of 1

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Comment: tximeta cannot open annotation gtf? by Michael Love 43k

Yes, so this is the same type of error you would get if you tried to assemble a *SummarizedExperiment* manually with tximport + GTF process…

Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Answer: GSEA error by James W. MacDonald 68k

At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

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Answer: GSEA error

Answer: OrgDb for maize

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

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