Showing : microRNA • reset
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Very low P-values in limma
miRNA limma microRNA miRNA limma microRNA
updated 14.5 years ago by ▴ 40 • written 14.5 years ago by ★ 1.3k
6
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11
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edgeR on microRNA data
microRNA edgeR miRNA
12.6 years ago • updated 2.9 years ago Gordon Smyth 50k
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10
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AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.
miRNA Microarray Cancer microRNA miRNA Microarray Cancer microRNA
13.9 years ago Neel Aluru ▴ 460
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5
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Limma question
limma microRNA limma microRNA
updated 12.3 years ago by ▴ 720 • written 12.4 years ago by ▴ 30
3
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4
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How to find significantly stably expressed miRNA with DESeq2 DE results
deseq2 microrna differential expression stable expression
8.5 years ago mariakarand ▴ 20
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5
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2.2k
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RUVseq for microRNAs
ruvseq ruv microrna
8.8 years ago • updated 8.7 years ago sergio.espeso-gil • 0
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11
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3.0k
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Very low P-values in limma
miRNA Microarray Normalization GO vsn limma microRNA miRNA Microarray Normalization GO
updated 14.5 years ago by ★ 1.3k • written 14.5 years ago by 50k
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2
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1.8k
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Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0
cdf microRNA cdf microRNA
updated 11.0 years ago by 65k • written 11.0 years ago by ▴ 10
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2
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1.5k
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ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
12.7 years ago Julie Zhu ★ 4.3k
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4
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A problem about trimLRPatterns
microRNA microRNA
updated 12.2 years ago by ▴ 590 • written 12.2 years ago by ★ 2.0k
0
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2
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1.3k
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AgiMicroRna package is not available at bioconductor or not in active form???
Microarray Network microRNA AgiMicroRna Microarray Network microRNA AgiMicroRna
updated 14.1 years ago by ▴ 60 • written 14.1 years ago by 21k
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5
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How to plot microRNA chromosome location
miRNA ideogram GenomeGraphs rtracklayer microRNA miRNA ideogram GenomeGraphs rtracklayer
updated 15.5 years ago by ▴ 40 • written 15.5 years ago by ▴ 620
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8
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GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.1 years ago by ▴ 930 • written 13.1 years ago by ▴ 860
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3
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1.3k
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duplicate correlation of 4 "within array replicates" limmaGUI
GUI limma limmaGUI microRNA GUI limma limmaGUI microRNA
15.5 years ago Gordon Smyth 50k
2
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2
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1.6k
views
normalized read count per group from edgeR
microrna edger
8.1 years ago manoharankumar01 • 0
0
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2
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1.6k
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LogFC in Limma
probe limma microRNA probe limma microRNA
updated 15.5 years ago by 50k • written 15.5 years ago by ▴ 20
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3
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R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Cancer Homo sapiens biomaRt microRNA Transcription miRNA Cancer
14.6 years ago mauede@alice.it ▴ 870
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8
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microRNA hg build?
microRNA microRNA
updated 13.0 years ago by ★ 7.2k • written 13.0 years ago by ★ 1.1k
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3
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1.3k
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Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
Cancer Breast rtracklayer microRNA Cancer Breast rtracklayer microRNA
updated 15.4 years ago by ★ 1.6k • written 15.4 years ago by ▴ 310
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1
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The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
2
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1
reply
3.1k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2 microrna lfcThreshold stable expression ffpe
updated 8.5 years ago by 41k • written 8.5 years ago by ▴ 20
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3
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2.0k
views
How to plot microRNA chromosome location
miRNA ideogram GenomeGraphs microRNA miRNA ideogram GenomeGraphs microRNA
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 40
6
votes
2
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968
views
pair information of microRNA and Targets prediction
microRNA RmiR microRNA RmiR
updated 14.2 years ago by ★ 2.3k • written 14.2 years ago by ▴ 60
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1
reply
1.1k
views
building an annotation library from scratch
miRNA Annotation Organism db0 AnnotationDbi microRNA miRNA Annotation Organism db0
updated 14.5 years ago by ★ 7.2k • written 14.5 years ago by ▴ 610
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4
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1.2k
views
identifying drosophila miRNA targets
miRNA affy microRNA miRNA affy microRNA
updated 11.1 years ago by 65k • written 11.1 years ago by ▴ 70
0
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3
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views
mirDeep2 edgeR analysis
Sequencing miRNA microRNA Sequencing miRNA microRNA
updated 10.7 years ago by ★ 7.9k • written 10.7 years ago by ▴ 10
2
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6
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edgeR_robust: where are moderately expressed genes?
edger rnaseq microrna
updated 8.5 years ago by ★ 28k • written 8.5 years ago by • 0
0
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2
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1.2k
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help with array based microRNA data analysis
limma microRNA limma microRNA
updated 10.3 years ago by ★ 1.3k • written 10.3 years ago by ▴ 190
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4
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1.7k
views
Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 11.7 years ago by ★ 1.3k • written 11.7 years ago by ▴ 30
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5
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views
extracting sequence from a genome
miRNA microRNA miRNA microRNA
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ▴ 930
0
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4
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1.8k
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get al microRNA target sites for a given gene
microRNA microRNA
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 840
0
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6
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2.5k
views
Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
12.4 years ago Peter Davidsen ▴ 210
0
votes
1
reply
693
views
on-line documentation for package microRNA
microRNA microRNA
updated 14.7 years ago by 25k • written 14.7 years ago by ▴ 870
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3
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AgiMicroRna problems
miRNA Normalization FeatureExtraction PROcess microRNA AgiMicroRna miRNA Normalization
updated 13.6 years ago by ▴ 230 • written 13.6 years ago by ▴ 910
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1
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1.1k
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taqman versions
microRNA microRNA
updated 11.5 years ago by ▴ 120 • written 11.5 years ago by ▴ 320
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1
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1.1k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ▴ 120
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8
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1.8k
views
AgiMicroRna problems
Normalization PROcess microRNA AgiMicroRna Normalization PROcess microRNA AgiMicroRna
13.6 years ago Mark Cowley ▴ 910
0
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1
reply
1.2k
views
AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 13.2 years ago by ▴ 200 • written 13.2 years ago by ▴ 120
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1
reply
970
views
cdf environment fo microRNA dataset
Microarray cdf microRNA Microarray cdf microRNA
updated 12.8 years ago by 65k • written 12.8 years ago by ▴ 10
0
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2
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840
views
support for miRNA-1_0?
affy microRNA affy microRNA
updated 14.7 years ago by ★ 3.9k • written 14.7 years ago by ★ 1.4k
0
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1
reply
2.8k
views
BIRD 2008
Genetics Pathways Cancer PROcess microRNA a4 Genetics Pathways Cancer PROcess microRNA
16.5 years ago Prof. Roland Wagner ▴ 100
0
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3
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2.7k
views
Affymetrix genechip miRNA array analysis
miRNA limma microRNA miRNA limma microRNA
14.6 years ago Jordi Altirriba Gutiérrez ▴ 350
0
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10
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1.9k
views
microRNA: which genes code for a specific mirna?
miRNA GO microRNA miRNA GO microRNA
updated 14.1 years ago by ▴ 830 • written 14.1 years ago by ★ 1.1k
0
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1
reply
1.3k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago • updated 15.3 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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4
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1.1k
views
One-Color Agilent miRNA microarrays
miRNA Microarray limma microRNA miRNA Microarray limma microRNA
updated 16.7 years ago by ▴ 60 • written 16.7 years ago by 50k
0
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6
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1.3k
views
any good R package to scan microRNA target?
microRNA microRNA
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ★ 2.0k
0
votes
1
reply
959
views
AgiMicroRna package is not available at bioconductor or not in active form???
Microarray microRNA Microarray microRNA
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 100
0
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2
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1.1k
views
cvArray error from AgiMicroRna package
Cancer microRNA Cancer microRNA
14.2 years ago Daniel Brewer ★ 1.9k
0
votes
1
reply
846
views
AgiMicroRna package error message
Normalization microRNA AgiMicroRna Normalization microRNA AgiMicroRna
13.9 years ago Wang, Yonghong NIH/NCI ▴ 60
0
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1
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1.2k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 12.7 years ago by ★ 2.0k • written 12.7 years ago by ★ 3.9k
50 results • Page 1 of 1
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Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Votes
Answer: Gene set analysis: GSVA, Z-Score, and fold-changes
Answer: FilterByExpr low counts with small sample size
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
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