Showing : microRNA • reset
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microRNAs not available in TxDb.Hsapiens.UCSC.hg38.knownGene
microRNA TxDb.Hsapiens.UCSC.hg38.knownGene
15 months ago Lluís Revilla Sancho ▴ 730
1
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6
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983
views
low counts from microRNA seq
DESeq2 microRNA HTSeq
16 months ago • updated 15 months ago abhay.kanodia • 0
1
vote
4
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788
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
18 months ago • updated 17 months ago faiza • 0
1
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7
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1.5k
views
High padj in DESeq2
deseq2 RNA-seq microRNA
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 10
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1
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1.4k
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Using DeSeq2 on microRNA data
deseq2 mirdeep2 microRNA differential expression analysis
updated 4.0 years ago by 41k • written 4.0 years ago by • 0
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1
reply
599
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find genes near a microRNA binding site
R microRNA genes binding Site
4.8 years ago pengu447 • 0
0
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2
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1.3k
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R packages for differential expression analysis of raw data from arraystar microarrays
microarray lncrna microrna mrna raw data
updated 6.4 years ago by ★ 1.0k • written 6.4 years ago by • 0
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4
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1.4k
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Agilent microrna microaaray
agilent microarrays microrna analysis
6.6 years ago arisarkar88 ▴ 40
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0
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826
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gene set enrichment and pathway analysis of gene expression datas
microarray microrna
7.3 years ago n3da.karami • 0
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4
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1.2k
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Error while normalizing [miRNA-1_0] Affymetrix miRNA Array cel files
microrna microarray cdfinfo
updated 7.6 years ago by 65k • written 7.6 years ago by ▴ 40
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1.0k
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Combining TLDA cards for normalization
normalization microrna htqpcr
7.7 years ago jamie_jabalee • 0
0
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1
reply
2.8k
views
Error in file(file, "rt") : cannot open the connection - Using ExiMir Package
R eximir microrna
8.0 years ago 31sharmajittu1991 • 0
2
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2
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1.5k
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normalized read count per group from edgeR
microrna edger
8.1 years ago manoharankumar01 • 0
2
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6
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1.7k
views
edgeR_robust: where are moderately expressed genes?
edger rnaseq microrna
updated 8.5 years ago by ★ 28k • written 8.5 years ago by • 0
2
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1
reply
3.1k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2 microrna lfcThreshold stable expression ffpe
updated 8.5 years ago by 41k • written 8.5 years ago by ▴ 20
3
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4
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2.5k
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How to find significantly stably expressed miRNA with DESeq2 DE results
deseq2 microrna differential expression stable expression
8.5 years ago mariakarand ▴ 20
0
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5
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2.2k
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RUVseq for microRNAs
ruvseq ruv microrna
8.7 years ago sergio.espeso-gil • 0
0
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1
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1.5k
views
The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
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2
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1.2k
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help with array based microRNA data analysis
limma microRNA limma microRNA
updated 10.2 years ago by ★ 1.3k • written 10.2 years ago by ▴ 190
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3
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3.2k
views
mirDeep2 edgeR analysis
Sequencing miRNA microRNA Sequencing miRNA microRNA
updated 10.7 years ago by ★ 7.9k • written 10.7 years ago by ▴ 10
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2
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1.8k
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Chip Definition File (CDF) for Affymetrix microRNA Arrays 3.0
cdf microRNA cdf microRNA
updated 11.0 years ago by 65k • written 11.0 years ago by ▴ 10
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0
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1.4k
views
identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
11.1 years ago Fiona ▴ 70
0
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4
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1.2k
views
identifying drosophila miRNA targets
miRNA affy microRNA miRNA affy microRNA
updated 11.1 years ago by 65k • written 11.1 years ago by ▴ 70
0
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4
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1.1k
views
miRNA analysis advice
miRNA Microarray microRNA miRNA Microarray microRNA
updated 11.2 years ago by 65k • written 11.2 years ago by ▴ 70
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0
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1.7k
views
AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
11.2 years ago Gordon Smyth 50k
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1
reply
1.1k
views
taqman versions
microRNA microRNA
updated 11.5 years ago by ▴ 120 • written 11.5 years ago by ▴ 320
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4
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1.8k
views
get al microRNA target sites for a given gene
microRNA microRNA
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 840
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4
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1.7k
views
Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
Normalization GeneSpring microRNA AgiMicroRna Normalization GeneSpring microRNA AgiMicroRna
updated 11.7 years ago by ★ 1.3k • written 11.7 years ago by ▴ 30
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898
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Help with choice of normalization
Microarray Normalization GO microRNA Microarray Normalization GO microRNA
11.7 years ago Ali Mohammadian ▴ 290
0
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6
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1.3k
views
any good R package to scan microRNA target?
microRNA microRNA
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ★ 2.0k
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5
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5.9k
views
extracting sequence from a genome
miRNA microRNA miRNA microRNA
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ▴ 930
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4
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1.3k
views
A problem about trimLRPatterns
microRNA microRNA
updated 12.1 years ago by ▴ 590 • written 12.1 years ago by ★ 2.0k
0
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0
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817
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Trouble in using AgiMicroRna Package
Microarray microRNA Microarray microRNA
12.2 years ago Kannan Venugopal ▴ 10
0
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5
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1.5k
views
Limma question
limma microRNA limma microRNA
updated 12.3 years ago by ▴ 720 • written 12.3 years ago by ▴ 30
0
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0
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796
views
how to analyze
affy microRNA affy microRNA
12.4 years ago Adrian Johnson ▴ 330
0
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6
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2.5k
views
Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
12.4 years ago Peter Davidsen ▴ 210
6
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11
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2.6k
views
edgeR on microRNA data
microRNA edgeR miRNA
12.6 years ago • updated 2.9 years ago Gordon Smyth 50k
0
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2
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1.5k
views
ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
12.6 years ago Julie Zhu ★ 4.3k
0
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1
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1.2k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 12.7 years ago by ★ 2.0k • written 12.7 years ago by ★ 3.9k
0
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0
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789
views
align microRNA with custom mRNA sequences
Alignment Cancer Biostrings microRNA Alignment Cancer Biostrings microRNA
12.7 years ago Hervé Pagès 16k
0
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0
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809
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filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
12.7 years ago Viki S ▴ 20
0
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1
reply
969
views
cdf environment fo microRNA dataset
Microarray cdf microRNA Microarray cdf microRNA
updated 12.8 years ago by 65k • written 12.8 years ago by ▴ 10
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0
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1.2k
views
align microRNA with custom mRNA sequences
microRNA microRNA
12.8 years ago Jason Shoemaker ▴ 80
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0
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961
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dCHip
microRNA microRNA
12.8 years ago Ayse Ulgen ▴ 30
0
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0
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1.4k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
12.9 years ago chawla ▴ 190
0
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8
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1.6k
views
microRNA hg build?
microRNA microRNA
updated 12.9 years ago by ★ 7.2k • written 12.9 years ago by ★ 1.1k
0
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0
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1.3k
views
GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
13.1 years ago David ▴ 860
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8
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2.0k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.1 years ago by ▴ 930 • written 13.1 years ago by ▴ 860
0
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1
reply
1.1k
views
An error while installing RWebService
limma biomaRt RWebServices IRanges microRNA SJava ChIPpeakAnno limma biomaRt RWebServices
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ▴ 120
0
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1
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1.2k
views
AgiMicroRna problem
Annotation microRNA AgiMicroRna Annotation microRNA AgiMicroRna
updated 13.2 years ago by ▴ 200 • written 13.2 years ago by ▴ 120
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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