Showing : microRNA • reset
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edgeR on microRNA data
microRNA edgeR miRNA
12.6 years ago • updated 2.9 years ago Gordon Smyth 50k
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pair information of microRNA and Targets prediction
microRNA RmiR microRNA RmiR
updated 14.2 years ago by ★ 2.3k • written 14.2 years ago by ▴ 60
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How to find significantly stably expressed miRNA with DESeq2 DE results
deseq2 microrna differential expression stable expression
8.5 years ago mariakarand ▴ 20
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normalized read count per group from edgeR
microrna edger
8.1 years ago manoharankumar01 • 0
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Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2 microrna lfcThreshold stable expression ffpe
updated 8.5 years ago by 41k • written 8.5 years ago by ▴ 20
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edgeR_robust: where are moderately expressed genes?
edger rnaseq microrna
updated 8.5 years ago by ★ 28k • written 8.5 years ago by • 0
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High padj in DESeq2
deseq2 RNA-seq microRNA
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 10
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
18 months ago faiza • 0
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low counts from microRNA seq
DESeq2 microRNA HTSeq
16 months ago abhay.kanodia • 0
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ChIPpeakAnno, getAnnotation question
Annotation microRNA ChIPpeakAnno Annotation microRNA ChIPpeakAnno
12.7 years ago Julie Zhu ★ 4.3k
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BIRD Call for papers and posrters: New submission deadline September 15
Pathways microRNA Pathways microRNA
17.7 years ago Prof.Roland Wagner ▴ 60
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BIRD: Fiest internation conference : Bioinformatics in Research and Development
Pathways microRNA Pathways microRNA
17.8 years ago Prof.Roland Wagner ▴ 60
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BIRD 07 call for particpation
Pathways microRNA Pathways microRNA
17.4 years ago Prof.Roland Wagner ▴ 60
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Normalization of miRNA arrays
Normalization microRNA Normalization microRNA
16.9 years ago Denise Mauldin ▴ 50
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qPCR 2011 Symposium Talk and Poster CALL
qPCR Genetics microRNA qPCR Genetics microRNA
13.4 years ago qPCR Platform - the reference in real-t… ▴ 170
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duplicate correlation of 4 "within array replicates" limma gui
GUI limma microRNA GUI limma microRNA
15.6 years ago Christine Voellenkle ▴ 90
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BIRD
Pathways microRNA Pathways microRNA
17.9 years ago Prof.Roland Wagner ▴ 60
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open Junior group leader position, Medical University of Innsbruck, Austria
Proteomics Cancer microRNA tRanslatome Proteomics Cancer microRNA tRanslatome
15.9 years ago Johannes Rainer ▴ 300
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qPCR event preview - April 2010
miRNA qPCR Normalization probe microRNA cycle miRNA qPCR Normalization probe microRNA
14.0 years ago qPCR Platform - the reference in real-t… ▴ 170
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BIRD 2008 Conference Call for papers
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
16.4 years ago Prof. Roland Wagner ▴ 100
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Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
15.6 years ago Florian Markowetz ▴ 20
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duplicate correlation of 4 "within array replicates" limma gui
GUI limma microRNA GUI limma microRNA
15.6 years ago Naomi Altman ★ 6.0k
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duplicate correlation of 4 "within array replicates" limmaGUI
GUI limma limmaGUI microRNA GUI limma limmaGUI microRNA
15.5 years ago Gordon Smyth 50k
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LogFC in Limma
probe limma microRNA probe limma microRNA
updated 15.5 years ago by 50k • written 15.5 years ago by ▴ 20
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How to plot microRNA chromosome location
miRNA ideogram GenomeGraphs microRNA miRNA ideogram GenomeGraphs microRNA
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 40
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5
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How to plot microRNA chromosome location
miRNA ideogram GenomeGraphs rtracklayer microRNA miRNA ideogram GenomeGraphs rtracklayer
updated 15.5 years ago by ▴ 40 • written 15.5 years ago by ▴ 620
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LogFC in Limma
probe limma microRNA probe limma microRNA
15.5 years ago Hai Lin ▴ 20
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Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
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Loading problem with Rlibstree and microRNA packages on Mac OS X 10.4
rtracklayer microRNA rtracklayer microRNA
15.4 years ago Luo Weijun ★ 1.6k
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Loading problem with Rlibstree and microRNA packages on MacOS X 10.4
Cancer Breast rtracklayer microRNA Cancer Breast rtracklayer microRNA
updated 15.4 years ago by ★ 1.6k • written 15.4 years ago by ▴ 310
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AgiMicroRna problems
miRNA Normalization FeatureExtraction PROcess microRNA AgiMicroRna miRNA Normalization
updated 13.6 years ago by ▴ 230 • written 13.6 years ago by ▴ 910
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NEW deadline - Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
15.3 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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New microRNA & qPCR workshop in April 2009
SNP qPCR Normalization Regression microRNA SNP qPCR Normalization Regression microRNA
15.1 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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qPCR NEWS - February 2009
qPCR Normalization PROcess microRNA qPCR Normalization PROcess microRNA
15.2 years ago qPCR Platform - the reference in real-t… ▴ 170
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BIRD 2008 Conference
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
16.4 years ago Prof. Roland Wagner ▴ 100
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1.5k
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BIRD 2008
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
16.4 years ago Prof. Roland Wagner ▴ 100
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Two positions (PhD or PostDoc) in Berlin/Germany in biomedical data management and analysis
microRNA microRNA
15.0 years ago Ulf Leser ▴ 10
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microRNA Agilent normalization
Normalization microRNA Normalization microRNA
15.0 years ago Pedro Lopez-Romero ▴ 120
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on-line documentation for package microRNA
microRNA microRNA
updated 14.7 years ago by 25k • written 14.7 years ago by ▴ 870
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support for miRNA-1_0?
affy microRNA affy microRNA
updated 14.7 years ago by ★ 3.9k • written 14.7 years ago by ★ 1.4k
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R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Cancer Homo sapiens biomaRt microRNA Transcription miRNA Cancer
14.6 years ago mauede@alice.it ▴ 870
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Affymetrix genechip miRNA array analysis
miRNA limma microRNA miRNA limma microRNA
14.6 years ago Jordi Altirriba Gutiérrez ▴ 350
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R: difference between "hsa-miR-xxx" and "hsa-miR-xxx*"
miRNA Homo sapiens biomaRt microRNA miRNA Homo sapiens biomaRt microRNA
14.5 years ago mauede@alice.it ▴ 870
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Very low P-values in limma
miRNA limma microRNA miRNA limma microRNA
updated 14.5 years ago by ▴ 40 • written 14.5 years ago by ★ 1.3k
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Very low P-values in limma
miRNA Microarray Normalization GO vsn limma microRNA miRNA Microarray Normalization GO
updated 14.5 years ago by ★ 1.3k • written 14.5 years ago by 50k
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qPCR Events and 30% Discount on qPCR workshops
miRNA qPCR Epigenetics GO Visualization Network probe microRNA miRNA qPCR Epigenetics
14.5 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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building an annotation library from scratch
miRNA Annotation Organism db0 AnnotationDbi microRNA miRNA Annotation Organism db0
updated 14.5 years ago by ★ 7.2k • written 14.5 years ago by ▴ 610
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cvArray error from AgiMicroRna package
Cancer microRNA Cancer microRNA
14.2 years ago Daniel Brewer ★ 1.9k
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Annotation and expression detection of Illumina microRNA expression prolifing panels
Annotation probe annotate microRNA Annotation probe annotate microRNA
15.3 years ago Jitao David Zhang ▴ 340
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qPCR NEWS - December 2008
qPCR graph PROcess microRNA qPCR graph PROcess microRNA
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
50 results • Page 1 of 1
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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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