Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
microarray
•
reset
0
votes
1
reply
25
views
affy::rma results doesn't match with ncbi website
affy
Preprocessing
Microarray
updated 21 minutes ago by
ATpoint
★ 4.7k • written 11 hours ago by
akp9132
• 0
0
votes
1
reply
208
views
WGCNA sample-data preprocessing order
Microarray
WGCNA
GeneExpression
updated 7 weeks ago by
ATpoint
★ 4.7k • written 7 weeks ago by
Reuben
• 0
1
vote
8
replies
1.6k
views
Combining RNAseq and microarray data using edgeR/limma-voom
limma
voom
RNASeq
edgeR
Microarray
written 4 months ago by
Adam Marstrand
• 0
17
votes
8
replies
11k
views
remove microarray batch effects using Limma
Microarray
updated 8 months ago by
Gordon Smyth
52k • written 14.4 years ago by
Xie, Zhi NIH/NHLBI [E]
▴ 120
5
votes
8
replies
10k
views
Limma design with continuous and categorical covariates
limma
batch effect
covariates
microarray
updated 10 months ago by
hortense96
• 0 • written 8.6 years ago by
dmcleanuk
▴ 30
2
votes
2
replies
1.3k
views
limma for gene expression analysis with big and unbalanced sample size
limma
microarray
statistics
updated 10 months ago by
XW
• 0 • written 8.8 years ago by
tati6406
• 0
6 results • Page
1 of 1
Recent ...
Replies
Answer: affy::rma results doesn't match with ncbi website
by
ATpoint
★ 4.7k
Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
by
James W. MacDonald
68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column
by
Erika
• 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping
by
James W. MacDonald
68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question?
by
DavideSant
• 0
Thank you, this was super useful!
Votes
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Awards
• All
Popular Question
to
igor
▴ 50
Popular Question
to
xiaofeiwang198266
• 0
Scholar
to
shepherl
4.1k
Popular Question
to
James W. MacDonald
68k
Popular Question
to
Gordon Smyth
52k
Locations
• All
Germany,
23 minutes ago
Iran,
38 minutes ago
United States,
3 hours ago
UPF, Barcelona, Spain,
4 hours ago
Japan,
5 hours ago
Traffic: 702 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6