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microarray
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pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.1 years ago by
chandlerjd58
▴ 10
1
vote
4
replies
2.3k
views
How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray
Preprocessing
NimbleGen
Normalization
written 16 months ago by
Sarah
• 0
2
votes
2
replies
2.3k
views
Biostatistician Position: UMass Medical School
Microarray
Microarray
written 16.7 years ago by
David Lapointe
▴ 190
0
votes
2
replies
626
views
Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray
Alignment
Biostrings
written 11 months ago by
sandmann.t
▴ 70
1
vote
2
replies
826
views
Filter by expression and keep probes in limma
R
filter
limma
Normalization
Microarray
11 months ago
Abdul
▴ 20
2
votes
2
replies
612
views
Question about transforming log expression values to antilog values in limma
IlluminaChip
limma
AffymetrixChip
Normalization
Microarray
11 months ago
Abdul
▴ 20
0
votes
2
replies
644
views
Full list of differential genes not obtained in topTable
Microarray
GEOquery
topTable
limma
updated 12 months ago by
Gordon Smyth
50k • written 12 months ago by
Ankita
• 0
1
vote
6
replies
1.6k
views
can negative value microarray matrix data analysed by limma directly
limma
microarray
normalization
updated 7 months ago by
Gordon Smyth
50k • written 3.5 years ago by
linouhao
▴ 20
11
votes
4
replies
1.8k
views
LIMMA dupcor() function time issue.
limma
microarray
block
updated 6 months ago by
Gordon Smyth
50k • written 5.1 years ago by
tleona3
• 0
0
votes
2
replies
1.3k
views
Calculation of t-tests for factorial design
Microarray
limma
Microarray
limma
written 13.6 years ago by
Pascal Gellert
▴ 80
0
votes
7
replies
1.3k
views
A question about Limma
PROcess
Microarray
limma
19.2 years ago • updated 10 months ago
Gordon Smyth
50k
11 results • Page
1 of 1
Recent ...
Replies
Comment: Minfi - estimatecellscount
by
clacarion
• 0
Thank you for your response, that's what i was thinking I will try with the rgset only and come back to tell you what's happening ! Best…
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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