Showing : microarray • reset
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Biorad iCycler cfx manager files and HTqPCR
Microarray qPCR HTqPCR a4 Microarray qPCR HTqPCR a4
12.8 years ago b1gorsuch@comcast.net ▴ 20
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3
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Variability Plot For Toray Microarray Data
Microarray Microarray
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 10
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858
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Best Package To Normalize Microarray Data with Few Samples
Microarray Cancer Microarray Cancer
updated 12.9 years ago by ★ 4.2k • written 12.9 years ago by ▴ 230
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6
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about ComBat plot for non parametric
Microarray Cancer Microarray Cancer
updated 12.9 years ago by ▴ 30 • written 12.9 years ago by ▴ 870
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4
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Methods for time course gene expression analysis in an observational cohort
Microarray limma Microarray limma
12.9 years ago Oliver Hofmann ▴ 50
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2
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2.1k
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 12.9 years ago by ▴ 440 • written 12.9 years ago by ★ 13k
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[GSVA] Segfault with GSVA
RNASeq Microarray Annotation gcrma convert GSVA RNASeq Microarray Annotation gcrma GSVA
updated 12.9 years ago by ▴ 230 • written 12.9 years ago by ★ 3.4k
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3
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6.0k
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limma design and contrast matrix for paired experiment
Microarray limma edgeR Microarray limma edgeR
12.9 years ago Gordon Smyth 53k
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1.2k
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limma design and contrast matrix for paired experiment
Microarray Microarray
12.9 years ago David Westergaard ▴ 280
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4
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1.7k
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xps: hugene11 chip gives problems
Microarray Annotation xps Microarray Annotation xps
updated 12.9 years ago by ★ 3.9k • written 12.9 years ago by ▴ 630
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4
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3.0k
views
minfi - how to subset a GenomicMethylSet by chromosome/seqname
Microarray Annotation PROcess minfi Microarray Annotation PROcess minfi
updated 12.9 years ago by ★ 4.2k • written 12.9 years ago by ▴ 30
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Using different file formats with oligo and analysis packages using oligo
SNP Microarray qPCR cycle SNP Microarray qPCR cycle
12.9 years ago Hans Thompson ▴ 30
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4
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2.3k
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GEOquery getGEO error in read.table
Microarray GEOquery Microarray GEOquery
updated 12.9 years ago by ▴ 160 • written 12.9 years ago by ▴ 210
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3
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1.4k
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Double KO and timecourse design / limma
Microarray TimeCourse timecourse Microarray TimeCourse timecourse
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 160
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3
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2.8k
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ComBat
Microarray sva Microarray sva
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 20
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950
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Computer for the analysis of high-throughput genomic data
Sequencing Microarray GO Network Cancer Sequencing Microarray GO Network Cancer
12.9 years ago Steve Lianoglou ★ 13k
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1
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1.3k
views
significance of correlation genes/miRNAs expression
miRNA Microarray miRNA Microarray
updated 12.9 years ago by ★ 1.3k • written 12.9 years ago by ▴ 200
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5
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1.3k
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How to deal with SNPs in microarray
Microarray Microarray
updated 13.0 years ago by 21k • written 13.0 years ago by ▴ 50
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correlation between two pathways' genes
Microarray Pathways GSEABase Microarray Pathways GSEABase
13.0 years ago Robert Castelo ★ 3.4k
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1
reply
1.6k
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Anova for microarrays
Microarray Microarray
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 20
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873
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Correct data analysis with siggenes
Microarray Microarray
13.0 years ago Marco Ortiz ▴ 10
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1.9k
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Most diff exp genes are up-regulated... can this be true?
Microarray Normalization vsn limma siggenes Microarray Normalization vsn limma siggenes
13.0 years ago Peter Davidsen ▴ 210
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5
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2.0k
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oligo package
Microarray Annotation annotate PROcess Microarray Annotation annotate PROcess
updated 13.0 years ago by 68k • written 13.0 years ago by ★ 13k
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5
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2.0k
views
EBcoexpress error - initializeHP() error
Microarray Cancer EBcoexpress Microarray Cancer EBcoexpress
updated 13.0 years ago by ★ 8.2k • written 13.0 years ago by ★ 13k
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3
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read.ilmn error: length of 'dimnames' [1] not equal to array extent
Microarray Microarray
updated 13.0 years ago by ★ 3.6k • written 13.1 years ago by ▴ 20
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2
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1.6k
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results.summary function returns error
Microarray Annotation hgu133a simpleaffy Microarray Annotation hgu133a simpleaffy
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
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2
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1.9k
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frma for Nimblegen arrays?
Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 260
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
13.1 years ago McGee, Monnie ▴ 300
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1.1k
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Nimblegen microarray MM8_60mer_expr
Microarray Annotation oligo pdInfoBuilder Microarray Annotation oligo pdInfoBuilder
13.1 years ago Benilton Carvalho ★ 4.3k
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806
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Nimblegen microarray MM8_60mer_expr
Microarray Annotation Microarray Annotation
13.1 years ago Celine Mehats ▴ 10
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5
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1.9k
views
frma for Nimblegen arrays?
Microarray Normalization affy PROcess safe frma Microarray Normalization affy PROcess
updated 13.1 years ago by ▴ 830 • written 13.1 years ago by ▴ 260
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1
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1.6k
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Regarding CDF & annotation package
Microarray Annotation affylmGUI Microarray Annotation affylmGUI
updated 13.1 years ago by ★ 4.1k • written 13.1 years ago by ▴ 10
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1
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1.3k
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Help with installing genefilter -- "installed directory not writable"
Microarray genefilter Microarray genefilter
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ▴ 10
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1.4k
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Limma and multiple groups
Microarray limma Microarray limma
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
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840
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limma and legacy data
Microarray GO graph limma Microarray GO graph limma
13.1 years ago Simon Melov ▴ 340
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3.6k
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Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
13.2 years ago Dan Tenenbaum ★ 8.2k
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1.6k
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xps problem with root files
Microarray xps Microarray xps
updated 13.2 years ago by ★ 3.9k • written 13.2 years ago by ▴ 190
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3
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1.4k
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rna-seq
Microarray Pathways Network goseq Microarray Pathways Network goseq
updated 13.2 years ago by ▴ 350 • written 13.2 years ago by ★ 13k
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960
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(no subject)
Microarray Microarray
updated 13.2 years ago by ▴ 30 • written 13.2 years ago by ▴ 170
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1
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1.6k
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(microarray) - affylmGUI error when reading Affymetrix U133A and U133B .CEL file
Microarray PROcess affylmGUI Microarray PROcess affylmGUI
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 30
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1.6k
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Analysis of Differentially Expressed Genes using Microarray Technology
Microarray Microarray
updated 13.2 years ago by ▴ 750 • written 13.2 years ago by ▴ 40
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1
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786
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regarding affylmGUI
Microarray Microarray
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 170
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2
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1.1k
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Design of experiment....help please
Microarray Microarray
updated 13.2 years ago by ▴ 10 • written 13.2 years ago by ▴ 290
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5
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1.9k
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edgeR query
Microarray affy edgeR Microarray affy edgeR
updated 13.3 years ago by ★ 13k • written 13.3 years ago by ▴ 20
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2
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1.5k
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Installation of Annmap
Microarray annmap Microarray annmap
updated 13.3 years ago by ▴ 10 • written 13.3 years ago by ▴ 180
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1.4k
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HTqPCR problems
Microarray qPCR GO Preprocessing GLAD HTqPCR Microarray qPCR GO Preprocessing GLAD
13.3 years ago cfischer ▴ 10
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634
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Variability in microarray data
Microarray GO Network Microarray GO Network
13.3 years ago Guest User ★ 13k
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998
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Can I adjust family relationship in Limma?
Microarray graph limma Microarray graph limma
13.3 years ago Gordon Smyth 53k
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1.3k
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Job openings: Staff Scientist – Computational Biology and Bioinformatics – Massachusetts General Hospital
Sequencing Microarray Cancer Sequencing Microarray Cancer
13.3 years ago Wittner, Ben ▴ 290
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1.3k
views
FARMS package (fwd)
Microarray Normalization cdf plier farms Microarray Normalization cdf plier farms
13.4 years ago Günter Klambauer ▴ 540
2,319 results • Page 18 of 47
Recent ...
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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