2.3 years ago • updated 5 months ago
bioinformaticssrm2011
•
0
0
votes
0
replies
1.2k
views
Recent ...
Replies
Comment: Using TPM from tximport of Salmon output for singscore
by
Kent
•
0
Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…
Comment: GAGE kegg.gsets() self-signed certificate error
by
Lucas
•
0
Hello,
I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification.
I used the following code to …
Comment: Clarification on GOALL / GO2ALLORFs mapping
by
DavideSant
•
0
Thank you for your answer James.
I have to disagree though, at the SGD webpage you posted there is no indication that "GO:0045719 - negati…
Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
by
Michael Love
43k
And to add to this: when you put a generic package (e.g. DESeq2) as a tag, it actually emails the maintainer.
Answer: Using TPM from tximport of Salmon output for singscore
by
Michael Love
43k
TPM is fine, I've also sometimes used TPM with some robust column scaling, e.g.:
```
sf <- DESeq2::estimateSizeFactorsForMatrix(txi$abu…
Votes
Awards
• All
Popular Question to
Luca
•
0
Popular Question to
Hervé Pagès
16k
Scholar to
Michael Love
43k
Scholar to
James W. MacDonald
68k
Popular Question to
Wolfgang RAFFELSBERGER
▴
140
Locations
• All
Pittsburgh, United States, 3 minutes ago
United States, 3 minutes ago
United Kingdom, 13 minutes ago
Canada, 33 minutes ago
San Diego, 56 minutes ago
Pittsburgh, United States, 3 minutes ago
United States, 3 minutes ago
United Kingdom, 13 minutes ago
Canada, 33 minutes ago
San Diego, 56 minutes ago
Traffic: 622 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6