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minet
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parameters in build.mim in minet package
minet
build.mim
7.3 years ago
Pengcheng Yang
▴ 60
0
votes
0
replies
1.1k
views
changing the plot type in minet package
minet
plot
8.0 years ago
Angel
▴ 40
2
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6
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1.4k
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error in minet package
minet
software error
8.3 years ago
Angel
▴ 40
1
vote
1
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1.8k
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Error function discretize
minet
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
sleidymagaly
• 0
0
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908
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reverse engineering package
minet
qpgraph
minet
qpgraph
updated 14.1 years ago by
Robert Castelo
★ 3.2k • written 14.1 years ago by
Weiwei Shi
★ 1.2k
5 results • Page
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Answer: OrgDb for maize
by
James W. MacDonald
65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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