Bioconductor MinfiData

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methylclockData minfi methylclock minfidata

updated 7 weeks ago by James W. MacDonald 65k • written 7 weeks ago by sharangiiv • 0

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899

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RnBeads minfiData minfi EPICarray

updated 11 months ago by Basti ▴ 770 • written 11 months ago by Jitendra ▴ 10

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985

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 13 months ago by James W. MacDonald 65k • written 13 months ago by Grace • 0

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1.2k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 13 months ago by Grace • 0

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850

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minfiData ChAMP

2.3 years ago behr201 • 0

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716

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minfi minfiData MethylationArrayData

2.7 years ago ponche_de_kiwi • 0

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2.0k

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minfiData plotsex minfi minfiDataEPIC r

updated 3.1 years ago by suman • 0 • written 3.1 years ago by Bethan • 0

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2.0k

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minfi methylation dataimport minfidata missmethyl

updated 5.6 years ago by James W. MacDonald 65k • written 5.6 years ago by moldach ▴ 20

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1.5k

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minfi minfidata rgl. mac os x el capitan

updated 8.0 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.0 years ago by holbrookjoanna • 0

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2.2k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

9.0 years ago alejandretheodore • 0

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1.9k

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minfi minfidata illumina methylation dmpfinder

updated 9.6 years ago by James W. MacDonald 65k • written 9.6 years ago by michael.zulyniak • 0

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Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k

As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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