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minfiData
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0
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5
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1.1k
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minfi error read.metharray.exp
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
written 12 months ago by
Grace
• 0
0
votes
4
replies
937
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
updated 12 months ago by
James W. MacDonald
65k • written 12 months ago by
Grace
• 0
0
votes
3
replies
829
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 10 months ago by
Basti
▴ 750 • written 10 months ago by
Jitendra
▴ 10
1
vote
2
replies
2.0k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
moldach
▴ 20
0
votes
2
replies
1.9k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi
minfidata
illumina
methylation
dmpfinder
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
michael.zulyniak
• 0
0
votes
1
reply
1.5k
views
Problem loading minfi on macOS
minfi
minfidata
rgl.
mac os x
el capitan
updated 7.9 years ago by
Kasper Daniel Hansen
★ 6.5k • written 7.9 years ago by
holbrookjoanna
• 0
0
votes
1
reply
2.2k
views
Analyzing 450k Methylation from TCGA Website
minfidata
minfi
illuminahumanmethylation450k.db
illuminahumanmethylation450kanno.ilmn12.hg19
8.9 years ago
alejandretheodore
• 0
0
votes
1
reply
1.9k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 3.1 years ago by
suman
• 0 • written 3.1 years ago by
Bethan
• 0
0
votes
1
reply
134
views
Matrix multiplication error to estimate telomere length
methylclockData
minfi
methylclock
minfidata
updated 28 days ago by
James W. MacDonald
65k • written 29 days ago by
sharangiiv
• 0
0
votes
0
replies
828
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData
ChAMP
2.2 years ago
behr201
• 0
0
votes
0
replies
695
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi
minfiData
MethylationArrayData
2.6 years ago
ponche_de_kiwi
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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Pierre Lindenbaum
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50k
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Jenny Drnevich
★ 2.0k
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Robert Castelo
★ 3.1k
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Peter Langfelder
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