Biostar MinfiDataEPIC

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minfiDataEPIC arrays limma minfi Epigenetics

updated 19 months ago by Gordon Smyth 45k • written 19 months ago by Jeff ▴ 20

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minfiData plotsex minfi minfiDataEPIC r

updated 16 months ago by suman • 0 • written 16 months ago by Bethan • 0

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minfiDataEPIC #SexPrediction minfi

updated 9 months ago by Basti ▴ 330 • written 9 months ago by nucasa • 0

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Comment: Error: BiocParallel errors by lxl13260684135 • 0

I came across the same problem, have you solved it?

Answer: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Standard rules apply for filtering in R. If the genes are the rownames of the results object `res` then: res[my_ges,] or if the colu…

Answer: ComplexHeatmap: Change font size of annotation axis values by nalaspina • 0

Someone on the original post was kind enough to provide the answer (in bold below): row_ha = rowAnnotation(foo2 = runif(10), bar2 = anno…

Answer: setting sizeFactors from scran :: caculateSumFactors. by ATpoint ★ 1.3k

You can conveniently convert your SingleCellExperiment to a DESeqDataSet, see https://bioconductor.org/packages/devel/bioc/vignettes/scran/…

Comment: Combine GRanges(List) to a single GRanges with unified breakpoints by Rodrigo • 0

@malcolm-cook-6293, thank you for your response, I'm working through your code as we speak.

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