Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
minfiDataEPIC
•
reset
0
votes
0
replies
176
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
7 weeks ago
Felix
• 0
0
votes
1
reply
298
views
Error in reading my csv file in minfi
minfiDataEPIC
minfi
updated 5 months ago by
Basti
▴ 780 • written 5 months ago by
Ana
• 0
0
votes
1
reply
443
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 7 months ago by
Basti
▴ 780 • written 7 months ago by
titangerd
• 0
0
votes
6
replies
1.5k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 7 months ago by
Zuguang Gu
▴ 260 • written 8 months ago by
Izabela.ams
• 0
0
votes
1
reply
385
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC
minfi
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
phelankj
• 0
0
votes
1
reply
2.4k
views
Warning messages in detecting P-values
minfiDataEPIC
methylationArrayAnalysis
updated 9 months ago by
ATpoint
★ 4.0k • written 9 months ago by
rae.alshammari
▴ 10
0
votes
1
reply
536
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis
minfi
MethylationArrayData
minfiDataEPIC
MethylationArray
updated 12 months ago by
Gordon Smyth
50k • written 13 months ago by
Grace
• 0
0
votes
1
reply
920
views
Density Plot using Noob Normalisation vs Quantile Normalisation
Quantile
noob
Normalization
minfi
minfiDataEPIC
updated 20 months ago by
James W. MacDonald
65k • written 20 months ago by
mikat
• 0
0
votes
1
reply
874
views
EPIC ARRAY ANALYSIS
minfiDataEPIC
#SexPrediction
minfi
updated 2.6 years ago by
Basti
▴ 780 • written 2.6 years ago by
nucasa
• 0
0
votes
1
reply
2.0k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 3.2 years ago by
suman
• 0 • written 3.2 years ago by
Bethan
• 0
0
votes
2
replies
1.7k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
Jeff
▴ 20
11 results • Page
1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards
• All
Scholar
to
James W. MacDonald
65k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Supporter
to
Jonathan
▴ 10
Locations
• All
France,
6 minutes ago
Canada,
7 minutes ago
United States,
19 minutes ago
United States,
21 minutes ago
United States,
23 minutes ago
Traffic: 882 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6