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minfiDataEPIC
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Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
6 weeks ago
Felix
• 0
0
votes
1
reply
286
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Error in reading my csv file in minfi
minfiDataEPIC
minfi
updated 4 months ago by
Basti
▴ 770 • written 4 months ago by
Ana
• 0
0
votes
1
reply
434
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Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 6 months ago by
Basti
▴ 770 • written 6 months ago by
titangerd
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0
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6
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1.5k
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annotation EpicV2
minfiDataEPIC
EpicV2
updated 7 months ago by
Zuguang Gu
▴ 260 • written 8 months ago by
Izabela.ams
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0
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1
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371
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Two EPIC Methylation Array Analysis Questions
minfiDataEPIC
minfi
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
phelankj
• 0
0
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1
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2.4k
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Warning messages in detecting P-values
minfiDataEPIC
methylationArrayAnalysis
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
rae.alshammari
▴ 10
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Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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