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minfiDataEPIC
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Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
6 weeks ago
Felix
• 0
0
votes
1
reply
286
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Error in reading my csv file in minfi
minfiDataEPIC
minfi
updated 4 months ago by
Basti
▴ 770 • written 4 months ago by
Ana
• 0
0
votes
1
reply
433
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 6 months ago by
Basti
▴ 770 • written 6 months ago by
titangerd
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0
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6
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1.5k
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annotation EpicV2
minfiDataEPIC
EpicV2
updated 7 months ago by
Zuguang Gu
▴ 260 • written 8 months ago by
Izabela.ams
• 0
0
votes
1
reply
370
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Two EPIC Methylation Array Analysis Questions
minfiDataEPIC
minfi
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
phelankj
• 0
0
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1
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2.4k
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Warning messages in detecting P-values
minfiDataEPIC
methylationArrayAnalysis
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
rae.alshammari
▴ 10
6 results • Page
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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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