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minfidata
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Analyzing 450k Methylation from TCGA Website
minfidata
minfi
illuminahumanmethylation450k.db
illuminahumanmethylation450kanno.ilmn12.hg19
9.0 years ago
alejandretheodore
• 0
1
vote
2
replies
2.0k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
moldach
▴ 20
0
votes
1
reply
2.0k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 3.1 years ago by
suman
• 0 • written 3.2 years ago by
Bethan
• 0
0
votes
2
replies
1.9k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi
minfidata
illumina
methylation
dmpfinder
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
michael.zulyniak
• 0
0
votes
1
reply
1.5k
views
Problem loading minfi on macOS
minfi
minfidata
rgl.
mac os x
el capitan
updated 8.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.0 years ago by
holbrookjoanna
• 0
0
votes
5
replies
1.2k
views
minfi error read.metharray.exp
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
written 13 months ago by
Grace
• 0
0
votes
4
replies
990
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
Grace
• 0
0
votes
3
replies
903
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 11 months ago by
Basti
▴ 770 • written 11 months ago by
Jitendra
▴ 10
0
votes
0
replies
852
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData
ChAMP
2.3 years ago
behr201
• 0
0
votes
0
replies
718
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi
minfiData
MethylationArrayData
2.7 years ago
ponche_de_kiwi
• 0
0
votes
1
reply
161
views
Matrix multiplication error to estimate telomere length
methylclockData
minfi
methylclock
minfidata
updated 7 weeks ago by
James W. MacDonald
65k • written 7 weeks ago by
sharangiiv
• 0
11 results • Page
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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3.8k
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▴ 30
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Gordon Smyth
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