Bioconductor Minfidata

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minfiData minfi

updated 1 day ago by Basti ▴ 780 • written 3 days ago by clacarion • 0

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170

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methylclockData minfi methylclock minfidata

updated 8 weeks ago by James W. MacDonald 65k • written 8 weeks ago by sharangiiv • 0

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914

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RnBeads minfiData minfi EPICarray

updated 11 months ago by Basti ▴ 780 • written 11 months ago by Jitendra ▴ 10

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1000

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 13 months ago by James W. MacDonald 65k • written 13 months ago by Grace • 0

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1.2k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 13 months ago by Grace • 0

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855

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minfiData ChAMP

2.3 years ago behr201 • 0

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725

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minfi minfiData MethylationArrayData

2.7 years ago ponche_de_kiwi • 0

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2.0k

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minfiData plotsex minfi minfiDataEPIC r

updated 3.2 years ago by suman • 0 • written 3.2 years ago by Bethan • 0

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minfi methylation dataimport minfidata missmethyl

updated 5.6 years ago by James W. MacDonald 65k • written 5.6 years ago by moldach ▴ 20

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1.5k

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minfi minfidata rgl. mac os x el capitan

updated 8.0 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.0 years ago by holbrookjoanna • 0

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

9.0 years ago alejandretheodore • 0

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minfi minfidata illumina methylation dmpfinder

updated 9.6 years ago by James W. MacDonald 65k • written 9.6 years ago by michael.zulyniak • 0

12 results • Page 1 of 1

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Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Comment: PCA plot suggestions by JKim • 0

cross post: https://www.biostars.org/p/9593486/

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0