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minfi methylation dataimport minfidata missmethyl

updated 5.6 years ago by James W. MacDonald 65k • written 5.6 years ago by moldach ▴ 20

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125

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minfiData minfi

updated 12 hours ago by Basti ▴ 780 • written 2 days ago by clacarion • 0

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

9.0 years ago alejandretheodore • 0

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minfiData plotsex minfi minfiDataEPIC r

updated 3.2 years ago by suman • 0 • written 3.2 years ago by Bethan • 0

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minfiData ChAMP

2.3 years ago behr201 • 0

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RnBeads minfiData minfi EPICarray

updated 11 months ago by Basti ▴ 780 • written 11 months ago by Jitendra ▴ 10

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minfi minfiData MethylationArrayData

2.7 years ago ponche_de_kiwi • 0

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 13 months ago by Grace • 0

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 13 months ago by James W. MacDonald 65k • written 13 months ago by Grace • 0

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minfi minfidata rgl. mac os x el capitan

updated 8.0 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.0 years ago by holbrookjoanna • 0

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169

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methylclockData minfi methylclock minfidata

updated 8 weeks ago by James W. MacDonald 65k • written 8 weeks ago by sharangiiv • 0

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minfi minfidata illumina methylation dmpfinder

updated 9.6 years ago by James W. MacDonald 65k • written 9.6 years ago by michael.zulyniak • 0

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

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Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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