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minfidataepic
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Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
21 days ago
Felix
• 0
0
votes
1
reply
252
views
Error in reading my csv file in minfi
minfiDataEPIC
minfi
updated 4 months ago by
Basti
▴ 750 • written 4 months ago by
Ana
• 0
0
votes
1
reply
397
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 6 months ago by
Basti
▴ 750 • written 6 months ago by
titangerd
• 0
0
votes
6
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1.3k
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annotation EpicV2
minfiDataEPIC
EpicV2
updated 6 months ago by
Zuguang Gu
▴ 240 • written 7 months ago by
Izabela.ams
• 0
0
votes
1
reply
348
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Two EPIC Methylation Array Analysis Questions
minfiDataEPIC
minfi
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
phelankj
• 0
0
votes
1
reply
2.2k
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Warning messages in detecting P-values
minfiDataEPIC
methylationArrayAnalysis
updated 8 months ago by
ATpoint
★ 4.0k • written 8 months ago by
rae.alshammari
▴ 10
0
votes
1
reply
493
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis
minfi
MethylationArrayData
minfiDataEPIC
MethylationArray
updated 12 months ago by
Gordon Smyth
50k • written 12 months ago by
Grace
• 0
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Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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