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minfiDataEPIC arrays limma minfi Epigenetics

updated 3.4 years ago by Gordon Smyth 50k • written 3.4 years ago by Jeff ▴ 20

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minfiDataEPIC EpicV2

updated 7 months ago by Zuguang Gu ▴ 260 • written 8 months ago by Izabela.ams • 0

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minfiDataEPIC minfi

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by phelankj • 0

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 6 months ago by Basti ▴ 770 • written 6 months ago by titangerd • 0

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minfiData plotsex minfi minfiDataEPIC r

updated 3.1 years ago by suman • 0 • written 3.1 years ago by Bethan • 0

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minfiDataEPIC methylationArrayAnalysis

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by rae.alshammari ▴ 10

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methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by Grace • 0

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Quantile noob Normalization minfi minfiDataEPIC

updated 20 months ago by James W. MacDonald 65k • written 20 months ago by mikat • 0

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minfi minfiDataEPIC

6 weeks ago Felix • 0

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minfiDataEPIC #SexPrediction minfi

updated 2.5 years ago by Basti ▴ 770 • written 2.5 years ago by nucasa • 0

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minfiDataEPIC minfi

updated 4 months ago by Basti ▴ 770 • written 4 months ago by Ana • 0

11 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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