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minfiDataEPIC methylationArrayAnalysis

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by rae.alshammari ▴ 10

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minfiData plotsex minfi minfiDataEPIC r

updated 3.1 years ago by suman • 0 • written 3.1 years ago by Bethan • 0

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minfiDataEPIC arrays limma minfi Epigenetics

updated 3.4 years ago by Gordon Smyth 50k • written 3.4 years ago by Jeff ▴ 20

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minfiDataEPIC EpicV2

updated 7 months ago by Zuguang Gu ▴ 260 • written 8 months ago by Izabela.ams • 0

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Quantile noob Normalization minfi minfiDataEPIC

updated 20 months ago by James W. MacDonald 65k • written 20 months ago by mikat • 0

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minfiDataEPIC #SexPrediction minfi

updated 2.5 years ago by Basti ▴ 770 • written 2.5 years ago by nucasa • 0

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methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by Grace • 0

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434

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 6 months ago by Basti ▴ 770 • written 6 months ago by titangerd • 0

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371

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minfiDataEPIC minfi

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by phelankj • 0

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286

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minfiDataEPIC minfi

updated 4 months ago by Basti ▴ 770 • written 4 months ago by Ana • 0

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minfi minfiDataEPIC

6 weeks ago Felix • 0

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Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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