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minfiDataEPIC methylationArrayAnalysis

updated 9 months ago by ATpoint ★ 4.0k • written 9 months ago by rae.alshammari ▴ 10

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minfiData plotsex minfi minfiDataEPIC r

updated 3.2 years ago by suman • 0 • written 3.2 years ago by Bethan • 0

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1.7k

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minfiDataEPIC arrays limma minfi Epigenetics

updated 3.4 years ago by Gordon Smyth 50k • written 3.4 years ago by Jeff ▴ 20

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minfiDataEPIC EpicV2

updated 7 months ago by Zuguang Gu ▴ 260 • written 8 months ago by Izabela.ams • 0

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Quantile noob Normalization minfi minfiDataEPIC

updated 20 months ago by James W. MacDonald 65k • written 20 months ago by mikat • 0

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minfiDataEPIC #SexPrediction minfi

updated 2.6 years ago by Basti ▴ 780 • written 2.6 years ago by nucasa • 0

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methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by Grace • 0

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439

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 7 months ago by Basti ▴ 780 • written 7 months ago by titangerd • 0

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382

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minfiDataEPIC minfi

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by phelankj • 0

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292

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minfiDataEPIC minfi

updated 5 months ago by Basti ▴ 780 • written 5 months ago by Ana • 0

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171

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minfi minfiDataEPIC

6 weeks ago Felix • 0

11 results • Page 1 of 1

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Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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