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minfiDataEPIC arrays limma minfi Epigenetics

updated 3.4 years ago by Gordon Smyth 50k • written 3.4 years ago by Jeff ▴ 20

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minfiData plotsex minfi minfiDataEPIC r

updated 3.1 years ago by suman • 0 • written 3.2 years ago by Bethan • 0

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minfiDataEPIC EpicV2

updated 7 months ago by Zuguang Gu ▴ 260 • written 8 months ago by Izabela.ams • 0

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minfiDataEPIC minfi

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by phelankj • 0

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 6 months ago by Basti ▴ 770 • written 6 months ago by titangerd • 0

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minfiDataEPIC #SexPrediction minfi

updated 2.5 years ago by Basti ▴ 770 • written 2.5 years ago by nucasa • 0

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minfiDataEPIC methylationArrayAnalysis

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by rae.alshammari ▴ 10

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Quantile noob Normalization minfi minfiDataEPIC

updated 20 months ago by James W. MacDonald 65k • written 20 months ago by mikat • 0

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methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by Grace • 0

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minfiDataEPIC minfi

updated 4 months ago by Basti ▴ 770 • written 4 months ago by Ana • 0

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minfi minfiDataEPIC

6 weeks ago Felix • 0

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

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