Showing : mirna-seq • reset
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how to control age and gender effect in expression data using DESeq2
deseq2 rnaseq mirna-seq differential gene expression
written 6.1 years ago by • 0
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4
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4.4k
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miRNA-seq data analysis
miRNA mirna-seq
updated 7.1 years ago by ▴ 250 • written 7.1 years ago by • 0
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2
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Multiple comparisons for DE analysis with DESeq2
deseq2 mirna-seq experimental design differential expression
updated 7.0 years ago by ▴ 680 • written 7.0 years ago by ▴ 10
6
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7
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Differences between RTCGA and TCGAbiolinks data
r survival analysis rtcga tcgabiolinks mirna-seq
5.9 years ago atakanekiz ▴ 30
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3
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Limma: Differential expression for micro RNA sequence data
mirna-seq limma
updated 5.6 years ago by 50k • written 5.6 years ago by • 0
0
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3
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DESeq2: would 'contrast' work for serial experiments?
DESeq2 mirna-seq small RNA-seq
updated 6.3 years ago by 41k • written 6.3 years ago by ▴ 40
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2
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907
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help for package DESeq2 in R
mirna-seq
updated 5.8 years ago by ★ 1.1k • written 5.8 years ago by • 0
1
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2
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785
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help for deseq2
mirna-seq
5.9 years ago • updated 5.8 years ago ndiayediop2 • 0
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How to find non-DE miRNAs using Deseq2 ?
deseq2 differentially expression mirna-seq mirna target prediction
updated 5.9 years ago by 41k • written 5.9 years ago by • 0
9 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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Scholar to Robert Castelo ★ 3.2k
Popular Question to James W. MacDonald 65k
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Popular Question to Gordon Smyth 50k
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