Bioconductor Mirna-seq

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2.5k

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r survival analysis rtcga tcgabiolinks mirna-seq

5.9 years ago atakanekiz ▴ 30

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1.0k

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mirna-seq limma

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by Michael Stone • 0

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deseq2 rnaseq mirna-seq differential gene expression

written 6.1 years ago by klalit1803 • 0

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4.4k

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deseq2 mirna-seq experimental design differential expression

updated 6.9 years ago by Gavin Kelly ▴ 680 • written 6.9 years ago by francesco.gandolfi ▴ 10

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784

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mirna-seq

5.9 years ago • updated 5.8 years ago ndiayediop2 • 0

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907

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mirna-seq

updated 5.8 years ago by Levi Waldron ★ 1.1k • written 5.8 years ago by ndiayediop2 • 0

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686

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deseq2 differentially expression mirna-seq mirna target prediction

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by Björn • 0

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1000

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DESeq2 mirna-seq small RNA-seq

updated 6.3 years ago by Michael Love 41k • written 6.3 years ago by CandiceChuDVM ▴ 40

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4.4k

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miRNA mirna-seq

updated 7.1 years ago by Jon Bråte ▴ 250 • written 7.1 years ago by just • 0

9 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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