Showing : missMethyl • reset
3
votes
3
replies
3.4k
views
missMethyl: Gene ontology analysis
missMethyl
8.1 years ago philipp24 ▴ 30
1
vote
3
replies
2.9k
views
Pathway analysis of differentially methylated CpGs
limma missmethyl
8.1 years ago philipp24 ▴ 30
0
votes
1
reply
1.2k
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missMethyl package: gsameth bias plots
missmethyl plots bias package
updated 7.1 years ago by ▴ 40 • written 7.1 years ago by • 0
0
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3
replies
1.2k
views
Details of gene names in DE
missmethyl
updated 7.0 years ago by 65k • written 7.0 years ago by • 0
0
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2
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1.4k
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prior.prob has opposite effects in goana and kegga?
limma missMethyl gometh goana kegga
updated 6.8 years ago by 50k • written 6.9 years ago by ★ 2.0k
0
votes
1
reply
1.3k
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Test for differential variability with missMethyl (DiffVar) using block design
missmethyl diffvar design matrix limma block
updated 5.9 years ago by ▴ 50 • written 6.8 years ago by ▴ 180
2
votes
3
replies
901
views
GSEA for paired methylation data
missMethyl GSEA minfi methylGSA
updated 15 months ago by ▴ 40 • written 15 months ago by • 0
1
vote
2
replies
1.4k
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology GO overrepresentation analysis missmethyl gostats
updated 7.7 years ago by 65k • written 7.7 years ago by • 0
1
vote
2
replies
2.0k
views
Minfi read.metharray.sheet error
minfi methylation dataimport minfidata missmethyl
updated 5.6 years ago by 65k • written 5.6 years ago by ▴ 20
0
votes
6
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1.3k
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Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 2.8 years ago by ▴ 10 • written 3.8 years ago by ▴ 10
0
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1
reply
800
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missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 2.8 years ago by ▴ 10 • written 3.6 years ago by ▴ 10
0
votes
1
reply
228
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
updated 6 weeks ago by ▴ 40 • written 6 weeks ago by • 0
1
vote
1
reply
544
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 11 months ago by ▴ 40 • written 11 months ago by • 0
0
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1
reply
459
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 8 months ago by ▴ 170 • written 8 months ago by • 0
2
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6
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918
views
No enriched GO terms CpGs
DNAMethylation missMethyl
updated 13 months ago by ▴ 40 • written 13 months ago by • 0
0
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0
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355
views
goMeth
missMethyl
13 months ago anmolanp ▴ 10
0
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0
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899
views
MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.0 years ago Taub, Margaret ▴ 10
0
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0
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883
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which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
6.0 years ago RC • 0
0
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0
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832
views
missmethyl gsameth outputs matrix instead of dataframe
missmethyl gsameth
5.8 years ago owen.whitley ▴ 10
0
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0
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893
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missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
5.7 years ago peter.fransquet • 0
0
votes
2
replies
552
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 25 days ago by • 0 • written 11 months ago by • 0
0
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1
reply
481
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
11 months ago Grace • 0
0
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0
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1.2k
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Pathway analysis of differentially methylated CpGs
limma missmethyl
8.1 years ago philipp24 ▴ 30
23 results • Page 1 of 1
Recent ...
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Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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Scholar to Peter Hickey ▴ 740
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