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Comment: How to load fasta file with openPrimeR?
by
Santiago Edilberto
•
0
> library(openPrimeR)
There are missing/non-functioning external tools.
To use the full potential of openPrimeR, please mak…
Answer: Which input file is used for DGEList in EgdeR?
by
Gordon Smyth
47k
I use and recommend featureCounts. Despite all that has been written on this topic, I still think that direct gene counting is faster and m…
Comment: How to load fasta file with openPrimeR?
by
mdoering
▴
10
A FASTA file is a raw text file (not MS Word or the likes), with a specific structure, along the likes of:
> \>seq_id_1 \
> ACAGCACA \
> \…
Comment: How to load fasta file with openPrimeR?
by
Santiago Edilberto
•
0
How do I know if my file is properly formatted FASTA file?
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
by
Hervé Pagès
16k
Got it. Yeah I guess having a `strandMode` parameter for `readGAlignmentsList()` would help handle this.
@Robert: Do you want to open an i…
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