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mnncorrect
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[MnnCorrect] In case of known subpopulations
scran
single-cell
mnncorrect
rnaseq
6.7 years ago
Jens Preussner
▴ 30
5
votes
4
replies
2.0k
views
How to apply limma-trend or voom to batch corrected single cell data? (non-integer and negative values included)
MNNCorrect
scMerge
limma-trend
updated 3.0 years ago by
Gordon Smyth
50k • written 3.0 years ago by
hainct
• 0
4
votes
4
replies
1.8k
views
Some questions for remove batch effect by using mnnCorrect
batch effect
single cells
mnnCorrect
scran
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
xingxd16
▴ 20
2
votes
2
replies
1.8k
views
[MnnCorrect] Remove batch effects but keep condition effects
single-cell
scran
mnncorrect
rnaseq
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
John Reid
▴ 10
1
vote
2
replies
1.4k
views
SCRAN - Question: Error when calling cosineNorm through fastMNN
SCRAN
fastMNN
mnnCorrect
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
tobi
• 0
1
vote
2
replies
2.2k
views
keep getting this error "number of rows is not the same across batches" even though my 2 matrices have the same row number
mnncorrect
batch effect
scran
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
sara.nejat
• 0
2
votes
1
reply
993
views
batchelor batch correction correction runs into errors
batchelor
batch-correction
mnncorrect
fastmnn
rna-seq
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
rmf
▴ 20
6
votes
1
reply
3.1k
views
Downstream analysis after using mnnCorrect()
scran
mnncorrect
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
Dave Tang
▴ 210
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Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
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