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8.9k

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DESeq2 linear model model

updated 2.9 years ago by Michael Love 41k • written 9.4 years ago by andrew.j.skelton73 ▴ 370

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2.3k

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egdeR multiple time points model.matrix differential exon usage model

6.7 years ago heikki.sarin ▴ 10

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1.8k

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deseq2 experimental design timecourse rnaseq model

updated 7.5 years ago by Michael Love 41k • written 7.5 years ago by athief ▴ 20

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2.1k

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edgeR edger "glmqlftest()" timecourse model

updated 6.7 years ago by Ryan C. Thompson ★ 7.9k • written 6.7 years ago by heikki.sarin ▴ 10

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1.9k

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limma dose-response linear model model formula

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by biominer ▴ 10

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896

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Deseq2 model

7.7 years ago jrivera • 0

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1.5k

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EdgeR rank model

6.8 years ago philip.freda • 0

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2.1k

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limma goodness fit linear model

updated 9.2 years ago by Gordon Smyth 50k • written 9.2 years ago by nonCodingGene ▴ 10

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998

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deseq2 interaction model

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by aec ▴ 90

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1.0k

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DESeq2 ErrorincheckFullRank(modelMatrix) model

updated 3.4 years ago by Michael Love 41k • written 3.4 years ago by Isabelle • 0

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699

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DESeq2 LRT Model

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by JaneDoe • 0

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916

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diffbind blocking model

updated 3.5 years ago by Rory Stark ★ 5.1k • written 4.5 years ago by melnuesch ▴ 10

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916

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model BatchEffect hidden Design DESeq2

2.5 years ago m.glymenaki • 0

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1.2k

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dexseq timecourse model.matrix model

6.7 years ago heikki.sarin ▴ 10

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3.0k

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deseq2 model

updated 8.8 years ago by Simon Anders ★ 3.7k • written 8.8 years ago by da.de ▴ 30

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1.4k

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dexseq rna-seq model.matrix model

updated 6.7 years ago by Michael Love 41k • written 6.7 years ago by heikki.sarin ▴ 10

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Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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