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Comment: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq
by
Shihui
•
0
Hi Michael,
Yes I manually calculated the RPMs by dividing each genes RPM to the library read depth. I didn't do any other normalization …
Comment: shinyMethyl - saving the file
by
dorota.komar
•
0
I tried printing the page as pdf, unfortunately I get the same problem. I guess for now, I will need to save the graphs separately :)
Than…
Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
by
Mike Smith
★
6.1k
I'll echo James' suggestion to use the GRCh37 mirror. Most mirrors only have a guaranteed lifetime of 5 years from Ensembl, although it se…
Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
by
James W. MacDonald
63k
I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…
Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
by
James W. MacDonald
63k
It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…
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