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monocle
•
reset
0
votes
2
replies
90
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
6 days ago
EspressoKris
▴ 10
0
votes
0
replies
284
views
weighting sample group
monocle
SingleCell
DifferentialExpression
12 months ago
Sogand
• 0
1
vote
4
replies
1.6k
views
Trajectory analysis for single cell sequencing
single cell
trajectory analysis
tscan
monocle
updated 3.1 years ago by
Aaron Lun
★ 28k • written 3.1 years ago by
lirongrossmann
▴ 40
0
votes
1
reply
2.3k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq
monocle
updated 3.2 years ago by
Kevin Blighe
3.8k • written 3.2 years ago by
initialqy
• 0
0
votes
1
reply
1.9k
views
Pseudotime analysis on bulk RNASeq using monocle
pseudotime
monocle
dimensionality
3.7 years ago
pbachali
▴ 50
0
votes
1
reply
3.9k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.1 years ago
444579004
• 0
5
votes
3
replies
1.1k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle
differential gene expression
detectgenes function
Tutorial
4.7 years ago
S.Webb6
▴ 40
1
vote
1
reply
1.5k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq
monocle
updated 5.4 years ago by
davide risso
▴ 920 • written 5.4 years ago by
chitsazanalex
▴ 10
0
votes
1
reply
1.2k
views
Converting scater-normalized UMI data to Monocle CellDataSet
scater
scran
umi
monocle
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
supremerulersuraj
• 0
0
votes
1
reply
1.3k
views
monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
5.6 years ago
Mehmet Ilyas Cosacak
• 0
1
vote
5
replies
2.2k
views
Monocle causes R session to crash
software error
monocle
updated 6.2 years ago by
kevin.rue
▴ 320 • written 7.9 years ago by
galib36
▴ 10
0
votes
0
replies
1.2k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
6.2 years ago
kevin.rue
▴ 320
0
votes
0
replies
2.1k
views
Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R
monocle
6.2 years ago
A.H
• 0
3
votes
1
reply
969
views
Normalizing vs RNA content in scRNAseq data
monocle
scran
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
ankur.chakravarthy.10
▴ 40
0
votes
3
replies
1.1k
views
Batch effects and model matrices
deseq2
single cell
monocle
updated 6.3 years ago by
Michael Love
40k • written 6.3 years ago by
bvernot
• 0
0
votes
0
replies
866
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks
monocle
6.3 years ago
alexandriapinto1
▴ 10
0
votes
1
reply
986
views
Monocle group sizes
monocle
6.5 years ago
ribioinfo
▴ 100
0
votes
1
reply
3.2k
views
error in monocle.
monocle
updated 6.5 years ago by
driver.ian
• 0 • written 6.6 years ago by
ikwak
• 0
0
votes
0
replies
1.6k
views
Monocle-strange differential expression results
monocle
differential expression
7.7 years ago
sunil.mangalam
• 0
0
votes
0
replies
1.3k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
7.9 years ago
wanghao1993333
• 0
1
vote
2
replies
1.5k
views
Error message running DE-test in Monocle
monocle
cummerbund
DE
rnaseq
updated 8.2 years ago by
ksekine
• 0 • written 8.5 years ago by
Jon Bråte
▴ 250
21 results • Page
1 of 1
Recent ...
Replies
Comment: tximport error: vroom
by
Benji Bromberg
• 0
Worked perfectly! Thanks!
Comment: tximport error: vroom
by
Michael Love
40k
You can force the function used for importing: https://github.com/thelovelab/tximport/blob/devel/R/tximport.R#L265 Try `importer=read.del…
Comment: tximport error: vroom
by
Benji Bromberg
• 0
Of course! Let me know if you figure it out.
Comment: tximport error: vroom
by
RLiu
▴ 10
Thank you for providing this clue. I never installed vroom manually. I guess it is one of dependences for tximport that automatically insta…
Comment: tximport error: vroom
by
RLiu
▴ 10
I checked that all `quant.sf`s have the same line number (42013 lines in each file), which is different from tx2gene (81493 lines).
Votes
Answer: tximport error: vroom
Comment: tximport error: vroom
tximport error: vroom
Comment: Speeding up of DelayedArray::write_block()
Comment: Speeding up of DelayedArray::write_block()
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