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Showing :
monocle
•
reset
1
vote
5
replies
2.5k
views
Monocle causes R session to crash
software error
monocle
updated 6.7 years ago by
kevin.rue
▴ 350 • written 8.4 years ago by
galib36
▴ 10
0
votes
1
reply
1.4k
views
Converting scater-normalized UMI data to Monocle CellDataSet
scater
scran
umi
monocle
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
supremerulersuraj
• 0
1
vote
1
reply
1.9k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq
monocle
updated 5.9 years ago by
davide risso
▴ 950 • written 5.9 years ago by
chitsazanalex
▴ 10
0
votes
3
replies
1.3k
views
Batch effects and model matrices
deseq2
single cell
monocle
updated 6.7 years ago by
Michael Love
41k • written 6.7 years ago by
bvernot
• 0
3
votes
1
reply
1.1k
views
Normalizing vs RNA content in scRNAseq data
monocle
scran
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
ankur.chakravarthy.10
▴ 40
0
votes
1
reply
2.8k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq
monocle
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
initialqy
• 0
1
vote
4
replies
1.9k
views
Trajectory analysis for single cell sequencing
single cell
trajectory analysis
tscan
monocle
updated 3.6 years ago by
Aaron Lun
★ 28k • written 3.6 years ago by
lirongrossmann
▴ 40
0
votes
1
reply
3.5k
views
error in monocle.
monocle
updated 7.0 years ago by
driver.ian
• 0 • written 7.0 years ago by
ikwak
• 0
0
votes
1
reply
1.6k
views
monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
6.1 years ago
Mehmet Ilyas Cosacak
• 0
1
vote
2
replies
1.6k
views
Error message running DE-test in Monocle
monocle
cummerbund
DE
rnaseq
updated 8.7 years ago by
ksekine
• 0 • written 8.9 years ago by
Jon Bråte
▴ 250
0
votes
0
replies
427
views
weighting sample group
monocle
SingleCell
DifferentialExpression
18 months ago
Sogand
• 0
0
votes
2
replies
298
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
5 months ago
EspressoKris
▴ 10
0
votes
0
replies
1.4k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.3 years ago
wanghao1993333
• 0
0
votes
0
replies
1.7k
views
Monocle-strange differential expression results
monocle
differential expression
8.2 years ago
sunil.mangalam
• 0
0
votes
1
reply
1.1k
views
Monocle group sizes
monocle
7.0 years ago
ribioinfo
▴ 100
0
votes
0
replies
991
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks
monocle
6.8 years ago
alexandriapinto1
▴ 10
0
votes
0
replies
2.4k
views
Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R
monocle
6.7 years ago
A.H
• 0
0
votes
0
replies
1.4k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
6.7 years ago
kevin.rue
▴ 350
5
votes
3
replies
1.3k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle
differential gene expression
detectgenes function
Tutorial
5.1 years ago
S.Webb6
▴ 40
0
votes
1
reply
4.5k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.6 years ago
444579004
• 0
0
votes
1
reply
2.2k
views
Pseudotime analysis on bulk RNASeq using monocle
pseudotime
monocle
dimensionality
4.2 years ago
pbachali
▴ 50
21 results • Page
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Comment: BioC2024 abstract submission is open!
by
howell
• 0
What are the conditions for approval of people in difficult circumstances? I want this scholarship
Comment: European Bioconductor Conference 2023 planning
by
william
• 0
[@MariaDoyle][1] Without a doubt. In that position, I will be included in the discussion. [1]: https://support.bioconductor.org/u/239…
Comment: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
Georg
• 0
Thank you for the detailed response. The code worked right away. I appreciate the quick response.
Comment: Error in ImportRData
by
ulna
• 0
[@alastair.fortune][1][gorilla tag][2] The most recent version of IsoformSwitchAnalyzeR available on Github (v. 2.01.13) allowed me to reso…
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
ulna
• 0
[@ilayahari][1][basketball stars][2] The complete version of GEOmetadb cannot be downloaded, even though the demo file works. [1]: http…
Votes
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
A: HLA genes missing from TxDb.Hsapiens.UCSC.hg38.knownGene
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