Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
monocle
•
reset
0
votes
2
replies
298
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
5 months ago
EspressoKris
▴ 10
0
votes
0
replies
427
views
weighting sample group
monocle
SingleCell
DifferentialExpression
18 months ago
Sogand
• 0
1
vote
4
replies
1.9k
views
Trajectory analysis for single cell sequencing
single cell
trajectory analysis
tscan
monocle
updated 3.6 years ago by
Aaron Lun
★ 28k • written 3.6 years ago by
lirongrossmann
▴ 40
0
votes
1
reply
2.8k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq
monocle
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
initialqy
• 0
0
votes
1
reply
2.2k
views
Pseudotime analysis on bulk RNASeq using monocle
pseudotime
monocle
dimensionality
4.2 years ago
pbachali
▴ 50
0
votes
1
reply
4.5k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.6 years ago
444579004
• 0
5
votes
3
replies
1.3k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle
differential gene expression
detectgenes function
Tutorial
5.1 years ago
S.Webb6
▴ 40
1
vote
1
reply
1.9k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq
monocle
updated 5.9 years ago by
davide risso
▴ 950 • written 5.9 years ago by
chitsazanalex
▴ 10
0
votes
1
reply
1.4k
views
Converting scater-normalized UMI data to Monocle CellDataSet
scater
scran
umi
monocle
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
supremerulersuraj
• 0
0
votes
1
reply
1.6k
views
monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
6.1 years ago
Mehmet Ilyas Cosacak
• 0
1
vote
5
replies
2.5k
views
Monocle causes R session to crash
software error
monocle
updated 6.7 years ago by
kevin.rue
▴ 350 • written 8.4 years ago by
galib36
▴ 10
0
votes
0
replies
1.4k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
6.7 years ago
kevin.rue
▴ 350
0
votes
0
replies
2.4k
views
Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R
monocle
6.7 years ago
A.H
• 0
3
votes
1
reply
1.1k
views
Normalizing vs RNA content in scRNAseq data
monocle
scran
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
ankur.chakravarthy.10
▴ 40
0
votes
3
replies
1.3k
views
Batch effects and model matrices
deseq2
single cell
monocle
updated 6.7 years ago by
Michael Love
41k • written 6.7 years ago by
bvernot
• 0
0
votes
0
replies
992
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks
monocle
6.8 years ago
alexandriapinto1
▴ 10
0
votes
1
reply
1.1k
views
Monocle group sizes
monocle
7.0 years ago
ribioinfo
▴ 100
0
votes
1
reply
3.5k
views
error in monocle.
monocle
updated 7.0 years ago by
driver.ian
• 0 • written 7.0 years ago by
ikwak
• 0
0
votes
0
replies
1.7k
views
Monocle-strange differential expression results
monocle
differential expression
8.2 years ago
sunil.mangalam
• 0
0
votes
0
replies
1.4k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.3 years ago
wanghao1993333
• 0
1
vote
2
replies
1.6k
views
Error message running DE-test in Monocle
monocle
cummerbund
DE
rnaseq
updated 8.7 years ago by
ksekine
• 0 • written 8.9 years ago by
Jon Bråte
▴ 250
21 results • Page
1 of 1
Recent ...
Replies
Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Awards
• All
Popular Question
to
rocanja
▴ 60
Popular Question
to
rproendo
▴ 20
Popular Question
to
Wolfgang RAFFELSBERGER
▴ 140
Popular Question
to
Dario Strbenac
★ 1.5k
Scholar
to
Hervé Pagès
16k
Locations
• All
Italy,
5 minutes ago
Germany,
15 minutes ago
Switzerland,
22 minutes ago
France,
26 minutes ago
Poland,
40 minutes ago
Traffic: 716 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6