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monocle
•
reset
0
votes
2
replies
306
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
6 months ago
EspressoKris
▴ 10
0
votes
0
replies
432
views
weighting sample group
monocle
SingleCell
DifferentialExpression
18 months ago
Sogand
• 0
1
vote
4
replies
2.0k
views
Trajectory analysis for single cell sequencing
single cell
trajectory analysis
tscan
monocle
updated 3.6 years ago by
Aaron Lun
★ 28k • written 3.6 years ago by
lirongrossmann
▴ 40
0
votes
1
reply
2.8k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq
monocle
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
initialqy
• 0
0
votes
1
reply
2.3k
views
Pseudotime analysis on bulk RNASeq using monocle
pseudotime
monocle
dimensionality
4.2 years ago
pbachali
▴ 50
0
votes
1
reply
4.5k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.6 years ago
444579004
• 0
5
votes
3
replies
1.3k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle
differential gene expression
detectgenes function
Tutorial
5.2 years ago
S.Webb6
▴ 40
1
vote
1
reply
1.9k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq
monocle
updated 5.9 years ago by
davide risso
▴ 950 • written 5.9 years ago by
chitsazanalex
▴ 10
0
votes
1
reply
1.4k
views
Converting scater-normalized UMI data to Monocle CellDataSet
scater
scran
umi
monocle
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
supremerulersuraj
• 0
0
votes
1
reply
1.6k
views
monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
6.1 years ago
Mehmet Ilyas Cosacak
• 0
1
vote
5
replies
2.5k
views
Monocle causes R session to crash
software error
monocle
updated 6.7 years ago by
kevin.rue
▴ 350 • written 8.4 years ago by
galib36
▴ 10
0
votes
0
replies
1.4k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
6.7 years ago
kevin.rue
▴ 350
0
votes
0
replies
2.5k
views
Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R
monocle
6.7 years ago
A.H
• 0
3
votes
1
reply
1.1k
views
Normalizing vs RNA content in scRNAseq data
monocle
scran
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
ankur.chakravarthy.10
▴ 40
0
votes
3
replies
1.3k
views
Batch effects and model matrices
deseq2
single cell
monocle
updated 6.8 years ago by
Michael Love
41k • written 6.8 years ago by
bvernot
• 0
0
votes
0
replies
994
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks
monocle
6.8 years ago
alexandriapinto1
▴ 10
0
votes
1
reply
1.1k
views
Monocle group sizes
monocle
7.0 years ago
ribioinfo
▴ 100
0
votes
1
reply
3.5k
views
error in monocle.
monocle
updated 7.0 years ago by
driver.ian
• 0 • written 7.0 years ago by
ikwak
• 0
0
votes
0
replies
1.7k
views
Monocle-strange differential expression results
monocle
differential expression
8.2 years ago
sunil.mangalam
• 0
0
votes
0
replies
1.4k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.4 years ago
wanghao1993333
• 0
1
vote
2
replies
1.6k
views
Error message running DE-test in Monocle
monocle
cummerbund
DE
rnaseq
updated 8.7 years ago by
ksekine
• 0 • written 9.0 years ago by
Jon Bråte
▴ 250
21 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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James W. MacDonald
65k
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Pierre Lindenbaum
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Gordon Smyth
50k
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Jenny Drnevich
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