Showing : mooc • reset
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Tutorial: Bioconductor on Coursera
mooc Tutorial
updated 3.5 years ago by • 0 • written 6.0 years ago by 6.5k
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Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0
Hi Professor Smyth, Thank you very much for the code. That has solved my problem. All the best. Field
Comment: Understanding output of Negative Binomial in DESeq2 by synat.keam • 0
Thank, Senior. sorry for cross posting as I was thinking in case I got different opinion, but the explanation was clear from Biostar. thank…
Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k
Cross posted to Biostars https://www.biostars.org/p/9490039/
Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k
The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…
Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading by Michael Love 34k
The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.
Votes
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Answer: Effect size using likelihood ratio test in DESeq2
Comment: ggtree install
Answer: Warning messages on Apple M1 BigSur
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
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Scholar to Gordon Smyth 43k
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Hans-Ulrich Klein ▴ 330
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Scholar to Jiang, Mike ★ 1.3k
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