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motifdb
•
reset
2
votes
6
replies
1.4k
views
Identifying TF binding sites (Motifdb + TxDb.Hsapiens.UCSC.hg19.knownGene)
motifdb
JASPAR
transcription factor binding site
6.7 years ago
Lisa Hopcroft
▴ 40
0
votes
1
reply
887
views
ChIPpeakAnno "examplePattern.fa" file
rGADEM
MotifDb
rGADEM
MotifDb
updated 9.3 years ago by
José Luis Lavín
▴ 80 • written 9.3 years ago by
Paul Shannon
▴ 750
2
votes
16
replies
948
views
MotifDb missing some FlyFactor Motifs
Motifdb
updated 3 months ago by
gunjan.dikshit
• 0 • written 2.1 years ago by
snystrom
▴ 10
0
votes
1
reply
917
views
problem installing biocLite, MotifDb.
motifdb
bioclite
updated 6.0 years ago by
Hervé Pagès
15k • written 6.0 years ago by
mirzabiotech2000
• 0
3
votes
3
replies
1000
views
Fail to load "MotifDb" package
MotifDb
library
load
updated 5.3 years ago by
Paul Shannon
▴ 470 • written 5.3 years ago by
Pengcheng Yang
▴ 50
0
votes
2
replies
988
views
How to make a MotifDb object from pwm/pfm files?
motifdb
updated 4.8 years ago by
Paul Shannon
▴ 470 • written 4.8 years ago by
niuyw
▴ 20
1
vote
1
reply
630
views
total number of unique transcription factors in MotifDB
motifdb
updated 4.7 years ago by
Paul Shannon
▴ 470 • written 4.7 years ago by
scotronq
• 0
0
votes
1
reply
1.3k
views
promoter prediction
Transcription
MotIV
MotifDb
Transcription
MotIV
MotifDb
updated 9.6 years ago by
Jing Huang
▴ 380 • written 9.6 years ago by
Paul Shannon
▴ 750
0
votes
5
replies
1.8k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 7.8 years ago by
Robert Stojnic
▴ 80 • written 7.8 years ago by
deepti anand
▴ 50
0
votes
1
reply
1.8k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 6.6 years ago by
Robert Stojnic
▴ 50 • written 6.6 years ago by
elliott77
• 0
2
votes
1
reply
2.7k
views
Please suggest any good motif Discovery tool in R-Bioconductor.
motif
motifdb
meme
updated 6.6 years ago by
Hervé Pagès
15k • written 6.6 years ago by
vinod.acear
▴ 50
0
votes
0
replies
1.1k
views
ChIPpeakAnno
rGADEM
MotIV
MotifDb
rGADEM
MotIV
MotifDb
8.3 years ago
Bahar
▴ 10
1
vote
0
replies
981
views
question on MotifDb package
Transcription
MotifDb
Transcription
MotifDb
8.3 years ago
Paul Shannon
▴ 470
2
votes
0
replies
660
views
motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm
pfm
jaspar
motifdb
updated 3.5 years ago by
Bioconductor Community
0 • written 3.6 years ago by
chrisclarkson100
▴ 50
0
votes
0
replies
541
views
Research questions that are answered using MotifDb
MotifDb
MotifDb
8.5 years ago
T M
▴ 10
0
votes
3
replies
1.0k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
6.6 years ago
vinod.acear
▴ 50
16 results • Page
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Comment: Limma beta coefficient confidence intervals
by
fluentin44
• 0
Ok much appreciated, thanks!
Comment: cellCounts() function floating point error
by
Wei Shi
★ 3.4k
Sorry for the confusion on the version numbers. I have modified my reply to clarify this. The screen output of cellCounts version 2.10.2 is…
Comment: cellCounts() function floating point error
by
Yang Liao
▴ 340
I assume that you downloaded the source code of Rsubread (v2.10.4) from https://bioconductor.org/packages/release/bioc/html/Rsubread.html ?…
Comment: cellCounts() function floating point error
by
J-E
• 0
1) The output you can see is from the Rsubread 2.10.4 package that was downloaded from Bioconductor and installed from the source tar.gz fi…
Answer: cellCounts() function floating point error
by
Wei Shi
★ 3.4k
Hi J-E, thank you for providing further information. We had a close look at the information you provided and found that although your sessi…
Votes
Answer: cellCounts() function floating point error
Comment: Limma beta coefficient confidence intervals
Answer: Limma beta coefficient confidence intervals
Answer: package 'BiocInstaller' is not available (for R version 3.4.4)
Answer: batchelor correctExperiments() returns Error in eval(subscript, envir = eframe,
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