Bioconductor Motifdb

Showing : motifdb • reset

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2.7k

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motifdb JASPAR transcription factor binding site

10.2 years ago Lisa Hopcroft ▴ 40

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1.7k

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rGADEM MotifDb rGADEM MotifDb

updated 12.9 years ago by José Luis Lavín ▴ 80 • written 12.9 years ago by Paul Shannon ▴ 750

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3.8k

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Motifdb

updated 3.9 years ago by gunjan.dikshit • 0 • written 5.7 years ago by snystrom ▴ 10

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1.7k

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motifdb bioclite

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by mirzabiotech2000 • 0

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2.1k

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MotifDb library load

updated 8.8 years ago by Paul Shannon ▴ 470 • written 8.9 years ago by Pengcheng Yang ▴ 60

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2.1k

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motifdb

updated 8.4 years ago by Paul Shannon ▴ 470 • written 8.4 years ago by Yiwei Niu ▴ 20

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1.6k

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motifdb

updated 8.3 years ago by Paul Shannon ▴ 470 • written 8.3 years ago by scotronq • 0

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2.1k

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Transcription MotIV MotifDb Transcription MotIV MotifDb

updated 13.2 years ago by Jing Huang ▴ 380 • written 13.2 years ago by Paul Shannon ▴ 750

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3.2k

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BSgenome convert BSgenome PWMEnrich MotifDb

updated 11.4 years ago by Robert Stojnic ▴ 80 • written 11.4 years ago by deepti anand ▴ 50

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2.7k

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pwmenrich MotifDB

updated 10.2 years ago by Robert Stojnic ▴ 50 • written 10.2 years ago by elliott77 • 0

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5.0k

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motif motifdb meme

updated 10.2 years ago by Hervé Pagès 16k • written 10.2 years ago by vinod.acear ▴ 50

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1.7k

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rGADEM MotIV MotifDb rGADEM MotIV MotifDb

11.9 years ago Bahar ▴ 10

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1.7k

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Transcription MotifDb Transcription MotifDb

11.9 years ago Paul Shannon ▴ 470

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2.7k

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pwm pfm jaspar motifdb

updated 7.0 years ago by Bioconductor Community 0 • written 7.1 years ago by chrisclarkson100 ▴ 50

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MotifDb MotifDb

12.0 years ago T M ▴ 10

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2.0k

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motifdb matchpwm motif pwmenrich pwm

10.2 years ago vinod.acear ▴ 50

16 results • Page 1 of 1

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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

I updated the above answer today.

Answer: When to use edgeR or limma by James W. MacDonald 68k

I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…

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Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

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Popular Question to Lluís Revilla Sancho ▴ 760