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motifs
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How are the MotifbreakR scores calculated, and how do they relate to one another?
MotifbreakR
R
motifs
5.0 years ago
camerond
• 0
0
votes
0
replies
777
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.4 years ago
rbronste
▴ 60
0
votes
0
replies
833
views
Visualizing motif instances in peak data
motifs
TF
peakset
plots
7.1 years ago
rbronste
▴ 60
0
votes
1
reply
1.3k
views
Heatmap of motif clusters
genomation
motifs
updated 7.6 years ago by
altuna akalin
▴ 20 • written 7.6 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.3k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
8.3 years ago
Gustavo Fernández Bayón
▴ 440
5 results • Page
1 of 1
Recent ...
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Answer: Why p value inconsistent when using different number of pathway score?
by
ATpoint
★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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Robert Castelo
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